Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4256 ATGGAAGAACCTCATAACAACCATGTTGATGATGATGGCTCACAATCGGAAAACGGATTTGGACATTACGGGTGCTCGCATTATAAAAGGAGATGCAAGATCATAGCACCTTGCTGTAATGAAATTTTCGATTGCAGACATTGCCATAACGAATCTAAGAATTCGATTCAGGTTGTTGATCCTGCACACCGCCACGACATTCCTCGCCATGAAGTTAAGAGGGTCATTTGTTCCTTGTGTAGCACTGAGCAAGATGTTCAACAGATTTGCATTCAATGCGGTGTTTGCATGGGTAGATACTTCTGCTCCAAATGCAAGTTCTTTGATGACGATGTTTCAAAAAAACAATACCATTGTGATGAATGTGGCATATGCAGAACTGGAGGTGAAGAGAACTTTTTCCACTGTAACAAATGTGAATGTTGTTATTCAATGCTGATGAAGGATTCACACCGTTGTATTGAAAAAGCAATGCATCAGAATTGCCCAGTTTGCTTTGAGTTTCTCTTTGATACAACAAAAGACATCACTGTATTGCCGTGTGGTCACACCATACATTTGGAATGTGTGAGAGAAATGCAACAGCATTTCCAATATTCATGCCCTGTTTGTTCGAAATCATTTTGTGATATGTCGCGCGTGTGGGAGAAAATGGACGAGGAGGTTGCGTCAATGCCCATGCCTGAAATGTATCAAAACAAGATGGTTTGGATTCTATGCAATGACTGTGGTGAAACATCTGAAGTAAGATTTCATATTGTGGCGCACAAGTGCCTTAGATGCAAGTCTTACAACACTAGAAAGACACAAGCCGCGTCTGCGTCGTTCTTGTCAAGGATGGAAGAGATGAATAACTAG 858 0.4114 MEEPHNNHVDDDGSQSENGFGHYGCSHYKRRCKIIAPCCNEIFDCRHCHNESKNSIQVVDPAHRHDIPRHEVKRVICSLCSTEQDVQQICIQCGVCMGRYFCSKCKFFDDDVSKKQYHCDECGICRTGGEENFFHCNKCECCYSMLMKDSHRCIEKAMHQNCPVCFEFLFDTTKDITVLPCGHTIHLECVREMQQHFQYSCPVCSKSFCDMSRVWEKMDEEVASMPMPEMYQNKMVWILCNDCGETSEVRFHIVAHKCLRCKSYNTRKTQAASASFLSRMEEMNN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4256 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 3 283 - -
Mal3g4256 285 Pfam RING-type zinc-finger 162 202 IPR027370 -
Mal3g4256 285 SUPERFAMILY Zinc hairpin stack 98 155 IPR037275 -
Mal3g4256 285 SUPERFAMILY RING/U-box 160 210 - -
Mal3g4256 285 ProSiteProfiles Zinc finger CHY-type profile. 18 95 IPR008913 GO:0008270
Mal3g4256 285 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 3 283 - -
Mal3g4256 285 ProSiteProfiles Zinc finger CTCHY-type profile. 97 161 IPR017921 -
Mal3g4256 285 Pfam CHY zinc finger 25 107 IPR008913 GO:0008270
Mal3g4256 285 Pfam Zinc-ribbon 209 267 IPR039512 -
Mal3g4256 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 207 IPR013083 -
Mal3g4256 285 ProSiteProfiles Zinc finger RING-type profile. 162 205 IPR001841 -
Mal3g4256 285 SUPERFAMILY CHY zinc finger-like 22 97 IPR037274 GO:0008270
Mal3g4256 285 Gene3D - 233 276 - -
Mal3g4256 285 SMART ring_2 162 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4256 Mal-Chr3 121840002 121842545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4256 23 267 C2H2 Transcription Factor Family AT3G18290 41.036 1.00e-54 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4256 3 121840002 121842545 Mal3g4256 3 121840002 121842545 ECH