Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4252 ATGTTCCAAACAATATGCATATTGCTAATTATCTCGGTTCTAAGTTCATTTTCACCACTTGGAACAGCAATGCTGAACTTAACTCTTCCTGGAACACACCCTGACCCTGATGCTGTTGCTCATGAAGTTCATAGGAAAGTGAATGCTTCAATAGCAAGAAGGGAAATGCTATCTCCAGGATCTGCATGCATGACTGGTAACCCAATTGACGATTGTTGGAAATGCGATCCAGAATGGCCCAACAATCGTCAAAGGTTGGCAGATTGTGCAATTGGGTTTGGTCAGTATGCGAAAGGAGGAAAAGGTGGCGAATTTTACGTTGTAACAGATTCCTCAGATGATGATGCTGTTACCCCAAAACCGGGTACATTAAGATATGGTGTGATAAAGAATGAACCATTGTGGATAGTGTTCCCTAGTAACATGATGATTAAGCTGAAGCAAGAGCTTATATTTAATAGTTATAAGACTATTGATGGACGTGGAGCTGATGTTCATATTGTGGGAGGAGGGTGCATTACTTTGCAGTTTATTAGTAATGTTATCATACATAACATTCATATTCACCATTGTCACCCCTCAGGAAACACAAATGTACGATCAAGTCCAGAACACTTTGGCTACAGAACAATGTCAGACGGAGACGGAATATCTATATTCGGTTCAAAAGACATATGGATCGACCATTGCACACTCTCACATTGCAAAGATGGACTAATAGACGCAGTAATGGGATCGACAGGAATAACAATATCTAACAATTTCATGTCGCACCACAACGAAGTTATGCTCCTCGGACACAGCGATGACTACCTCCCAGACTCGGGAATGCAAGTCACGATCGCATTCAACCATTTTGGCGAGAAACTCGTTCAAAGGATGCCACGTTGCAGAAGAGGATACATCCATGTGGTCAACAATGATTTCACCGAGTGGGAAATGTATGCCATTGGTGGGAGTGGTGAACCAACTATTAACAGTCAAGGGAACCGTTACTTTGCGCCAATTAACCCTTTCGCTAAAGAGGTTACTAAGAGGGTTGAAACTGAGCAAAATAAGTGGAAAGGGTGGAATTGGAGGTCTGAGGGTGATGTTATGGTTAATGGTGCATTTTTTGTTACATCTGGTGACACTCTAGAGGTTAAGTATGAGAAGGCTTATAGTGTTGAACCTCAGTCTGCTGATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGTAATGCAAGGGACAATAACGTGGGAATGTGGAGCAGAGGACCAAGCAGCAACGATGACGGCGTTTTGGATTCTGGCCCGGATTACACAGATGATATGTCGGGCAGTGCGCGAGTGTCGTTGCCGTCTTCTTTTACTATGTTGCTGTGCTTCTTGTTGTCTTATAGAATGATAGCGTTAACAGTAATTCAATGA 1416 0.4258 MFQTICILLIISVLSSFSPLGTAMLNLTLPGTHPDPDAVAHEVHRKVNASIARREMLSPGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDDDAVTPKPGTLRYGVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHFGYRTMSDGDGISIFGSKDIWIDHCTLSHCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYFAPINPFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGDTLEVKYEKAYSVEPQSADRIVLLTMNSGVLGNARDNNVGMWSRGPSSNDDGVLDSGPDYTDDMSGSARVSLPSSFTMLLCFLLSYRMIALTVIQ* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4252 471 SUPERFAMILY Pectin lyase-like 62 398 IPR011050 -
Mal3g4252 471 PANTHER PECTATE LYASE 12-RELATED 3 424 - -
Mal3g4252 471 Gene3D - 66 408 IPR012334 -
Mal3g4252 471 Pfam Pectate lyase 147 326 IPR002022 -
Mal3g4252 471 PANTHER PECTATE LYASE 18-RELATED 3 424 IPR045032 GO:0030570
Mal3g4252 471 SMART amb_all 141 338 IPR002022 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Mal3g4252 471 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4252 Mal-Chr3 121799996 121803772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4252 1 467 Polysaccharide Lyase AT3G53190 72.464 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4252 K01728 - gmx:100775595 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4252 3 121799996 121803772 Mal3g4252 3 121799996 121803772 ECH
Mal3g4252 3 121799996 121803772 Mal1g3120 1 47393221 47398432 PCT