Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4239 ATGAATTTTCCGTTCGACGATTTCTCCTTCTTCAACGACAACGACATTCCCATCGAGTGGCGCAACTTCGACGAGAGCGAAATTCCAACAAGAGAACAACTCATGGACGCCGGAGCAGATCCCAGATTCATCAATTTAGTTTTGGAAGGTCACTCCGGCGACGAAGACGAAGAAGACGAAGAAGAAGATGAAGATGATGAAGAGTATGTTCCCGATGCGCCGTCGTCTAGGGTTTACCGATCTGATGAAGTAAGTGTCATTCCCGACGATGAGAGAAACAAGCGCCGAAGAATAGAAGGAGGAGAGGCTTCTTCTTCTTCGATTCCGGTCGGAAGCGCTGATTGTAGCCAAGAGAATGAATGGAACCCTGCTGATATCGATGGACTCAGTTGCCCTATTTGTATGGATGCTTGGACCAATAACGGCGATCATCACATTTGTTGTCTTCCTTGTGGACACATTTATGGCATGTCTTGCATCAAAAAATGGCTTCAACAGAAAAAAAATTCGGGGAAGTGTCCTCAATGTAATAGAAGATGTTCGATGAAGGATGTGAGGAAACTCTATGCTTCTAGACTAGTTGCTGTTGATGAAGAATCTCAGAAGAGAATTCGGTCACTTGAGACCAAATGTGCTTCTCTTGAGAGTAAGGATGGTGGTTGGCGCAAGAAAGAAGAGAGATGGATGAAGAGAGAAGCTGCATTGCTTTTTGATGTCCAGAACCTTAAGAAGAGAAACACTTATTTGGAGCAGCTGGTACTAGATATGCAGAGTAGGCAATCTGGATCAATGGGTGCCAGTGGGAACTCTCAATGGAAATATGAATCTGAGCCCAACTATTGCTTCCCCCTTCAGAATACATTCGACATGCATGGTGCTCGTGTATTTGATATAGACACTTCTAATCAAATTTTAATTATCGCACAAAAGTCAAAAGCAAAGGGTGATATGCACTGTCTAACTAAAATAAGCTTGATATCTCCATTTGAGATGCAAGATATTCTACTGCCTTCATCTACAAATGGTATTAGAGACCTGCATATTTCTCCTTTTGATAGTAGACAGGCCCTCTATGCTTCATTTGGGAAGCAATTGTCAGTGCTCAGCTTCGACAGCGGCACCCCTGTTCTCAATTATGATCTAGAGGTTCCTGCTTGGTCCTGTTCATGGGATTGCAACAGTACGCATTACATATATGCTGGACTACAGAATGGTAAAGTCCTGGTGTTTGACATGAGAAAAACTGCAGAACCCTTAAAATCTTTAGCCGGGTTGACTAGCAAACCTGTTCATAGTTTGCAGTCTCTTGCACAAACGAGTCTTTCTTCTGGTGTCAGAACCATCCTATCCGCATCTGCCATGGGTGCTTGTCAGTGGGAAATTGATTCTGATGAACGGTCATTTATGGTTCCTGGGACTGATGATCAAGGAGTTTGTATATCCCTTGCCTATTCCCCGAGCAGTGATGACATTGTTGTTTCATACCGTCCAAAGTTCAACATGTTGATGGATTCACCTCTTTCTACACCATCACCCACTCCTTCTCATGTAATTGGACAAGGAGTACAGGGCTCTCATGTATTATTAAAGAGAACGGCTGGTAATAATTTCCAACAGATGGGTTCCTCGTATGCCAATGTAAGTAAAATTCGACTACCAAAAAGTATAATTATAGACATAGGGAATCAGAATAGAATGTTTGCATCTGGAGATGAAGTTACATGTGACTTGGTCTTGCAAGAGTTACCATCTTTTAAAGTTATTCAGCGATTCAAAATGCCAGCTCAGGCCCGTGATATTAGGTACTCACCTAGTCATGGAATGCTTGGTTGTTTAAGTGAGAATTCATTGCAAATTTTCCGTACCAATCTCTTGTGA 1878 0.4255 MNFPFDDFSFFNDNDIPIEWRNFDESEIPTREQLMDAGADPRFINLVLEGHSGDEDEEDEEEDEDDEEYVPDAPSSRVYRSDEVSVIPDDERNKRRRIEGGEASSSSIPVGSADCSQENEWNPADIDGLSCPICMDAWTNNGDHHICCLPCGHIYGMSCIKKWLQQKKNSGKCPQCNRRCSMKDVRKLYASRLVAVDEESQKRIRSLETKCASLESKDGGWRKKEERWMKREAALLFDVQNLKKRNTYLEQLVLDMQSRQSGSMGASGNSQWKYESEPNYCFPLQNTFDMHGARVFDIDTSNQILIIAQKSKAKGDMHCLTKISLISPFEMQDILLPSSTNGIRDLHISPFDSRQALYASFGKQLSVLSFDSGTPVLNYDLEVPAWSCSWDCNSTHYIYAGLQNGKVLVFDMRKTAEPLKSLAGLTSKPVHSLQSLAQTSLSSGVRTILSASAMGACQWEIDSDERSFMVPGTDDQGVCISLAYSPSSDDIVVSYRPKFNMLMDSPLSTPSPTPSHVIGQGVQGSHVLLKRTAGNNFQQMGSSYANVSKIRLPKSIIIDIGNQNRMFASGDEVTCDLVLQELPSFKVIQRFKMPAQARDIRYSPSHGMLGCLSENSLQIFRTNLL* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4239 625 Pfam Ring finger domain 130 177 IPR001841 -
Mal3g4239 625 MobiDBLite consensus disorder prediction 105 119 - -
Mal3g4239 625 MobiDBLite consensus disorder prediction 83 101 - -
Mal3g4239 625 SMART ring_2 131 176 IPR001841 -
Mal3g4239 625 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 53 621 - -
Mal3g4239 625 SUPERFAMILY WD40 repeat-like 284 623 IPR036322 GO:0005515
Mal3g4239 625 ProSiteProfiles Zinc finger RING-type profile. 131 177 IPR001841 -
Mal3g4239 625 PANTHER RFWD3 PROTEIN 53 621 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Mal3g4239 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 197 IPR013083 -
Mal3g4239 625 Gene3D - 198 505 IPR015943 GO:0005515
Mal3g4239 625 CDD mRING-C3HGC3_RFWD3 127 177 - -
Mal3g4239 625 Coils Coil 197 217 - -
Mal3g4239 625 MobiDBLite consensus disorder prediction 52 70 - -
Mal3g4239 625 MobiDBLite consensus disorder prediction 52 119 - -
Mal3g4239 625 SUPERFAMILY RING/U-box 124 183 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4239 126 179 C3H Transcription Factor Family AT2G39100 38.889 8.88e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4239 K15691 - gmx:100818898 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4239 3 121662884 121667741 Mal3g4239 3 121662884 121667741 ECH