LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal3g4211	ATGATAGGTGATTTTAGAGACAGAATTTGTACCACTGCTGAAATAAGGTACTACTTTCAGAGTTTTTTCCTAAAAGGAAGCACTTCTGCAAGTTATGTAAAAGCTAACAAAAATTGCAACTTGACTTCATGGGTTTCTGGTTGTGAACCTGGTTGGAGTTGTAGTGCTGATCAGAAAATTGATCTCAAAAAGGAAATAAAAGACATTCCTTCAAGAATTGATGATTGTCAACCTTGTTGTGAAGGGTTTTTCTGTCCTCAAGGATTAACTTGCATGATAACATGTCCACTTGGTTCTTATTGTCCACTTGCAAAATTGAATCAAACAACTGGAGTATGCGATCCATATAGTTACCAAATTCCTGCAGGAGAAACAAATCATACTTGTGGTAGTGCTGATATTTGGTCTGGTGCTGTCAACAATAATAATATCTTCTGTTCTCCGGGATCATATTGTCCTTCGCCGACGCGCAAAGTTTCTTGCGATAAAGGATATTACTGCAGGATGGGTTCAACTCATCAAAATCCATGCTCCAGGTTGAGTAGCTGTAATCCAAAAACAGCAACCCAAAACATGCATGCTTACGGTGCATTGATTATTGTTGCTATGAGTACTCTTCTGATCTTCATTTATAACTGTTCTGATCAAGTGCTAGCTACTAGAGAAAGAAGACAGGCTAAATCAAGAGAAGCTGCAGCAAAACACGTAAGAGAAACGGTACAAGCTCGCGAAAGATGGAAACAAGCAAGAGATTTGGCTAAAAAAGGTTCAGAGGGATTGCAAAAGCAGTTGTCTCGAACCTTTTCACGCAAGAAATCTACGAAACAAGGACCCCTATTTCCATCAAGCAAACCCGAGCAATCGTCGAAAACCAATAATAAGGAGCCTAGCAATCTTACTAAAATAATGCATTCAATTGAGGATGATGGACATGATGGATTTGATTTTCAGATTGGTGACAAGAACATTAAAAAGCAAATGCCAAAGGGAAAAAATTTACACACTCATAGCCAAATTTTAAGGTATGCTTATGGTCAAATAGAGAAGGAGAAAGCTCAGCAAGAGCAAAACAAGAACTTGACATTCTCAGGATTAATTTCAATGGCTGCTGAAGGTGAGGAAGTAAACACAAGACCTCCTATTGAGGTAGCTTTCAATAATCTAACCCTGACATTGAAGGGTAAAAACAAACATATACTGAGGTGTGTGAGTGGTAAAATCATGCCTGGTCGAGTTTCGGCTGTTATGGGACCCTCAGGAGCTGGAAAAACTACATTTCTTTCAGCGTTGGCAGGAAAAGCAAGAGGATGCACTATGTCAGGCTCAATTCTAGTTAATGGAAAAAATGAATCCATCCACTCTTATAAGAAAATTACTGGTTTTGTGCCACAAGATGATATTGTGCATGGAAACTTGACAGTAGAGGAAAATCTCCGTTTCAGCGCAAGATGCAGGCTCCCTGCAGACATGCCGAAACCAGATAAGGTTCTGATTGTTGAAAGAGTGATTGAGTCTTTAGGACTACAGCCAGTAAGGGATTCTCTAGTTGGGACGATAGAGAAAAGAGGCATATCCGGAGGGCAAAGAAAACGTGTAAATGTAGGACTAGAGATGGTGATGGAACCTTCATTATTAATCTTAGATGAGCCTACAACTGGTTTGGACAGCGCATCTTCTAGTTTACTTCTTAAAGCGCTTCGCCGTGAAGCTCTTGAAGGTGTAAACATCTGCATGGTACTTCACCAACCAAGTTATACTTTGTTTAGAATGTTTGATGATATAGTATTTCTAGCAAAAGGTGGTCTTACAGCATATCACGGTCCAGTGAAAAAAGTAGAAGAATACTTTGCTGGCATTGGAATCCATGTACCGGACCGCGTTAATCCTCCGGACCATTTCATTGATATTCTGGAAGGTTTAGAGAAACCAACTTCAGGTGTAACTATTGAAACACTTCCTGTTAGATGGATGCTTCATAATGGATATCCAGTACCAGCAGATATGTTTCATTTGGCTGATCAAATTGGCACTCCTGCATCCGCTACCACAAATGAAACTCGTTCGTCAAAGAGTACTGAGGAAACTTCTGATCAATCCTTTATTGTAGAGTTTCGGGAGGATTTGAAGAATAGTATTAGGATTCAAGGAGATCATATAGAAGCAATCTTCTCAAGAACAAAGGACTTATCTGGCCGAAAGACTCCTAGTGTAGCCCAACAATATAGATACTTCGTTGGCCGGGTTGGTAAGCAGCTGCTTAGAGAAGCAAGATTACAAGCAGTCGACTATCTCCTTTTATTGGTGGCCGGCGCTATCTTAGGAACTCTTGCCAAAGTAAATGATGAAACATTTGGGCCCCTTGGCTATACATTCACAGTTATTTCTGTTTCTCTACTTTGCAAGATTGCAGCACTTAGATCATTTACTATGGATAAGTTACAATACTGGAGGGAAAGTGCAGCTGGGATAAGCAGTCTAGCCCATTTTCTATCAAAGGATACAGTTGATCTTTTCAGTACAATCATCAAACCTGTAGTTTATCTTTCCATGTTCTATTTTTTAAGTAATCCAAGGTCAACCTTTGGAAGTAATTATATAGTTTTGGTTTGTTTGGTGTACTGTGTCACTGGTATGGCTTATGCATTAGCCATCTTCTTTCAGCCTAGTCCTGCTCAGCTGTGGTCAGTGCTTCTTCCTGTTGTTATGACTCTCATTGCTAACCAGAATAGAGATACTACATTTATGAAGATCTTGGTACAATTGTGCTATCCTAAATGGGCGTTGGAGGCATTTATCATTGCAAATGCTGAAAGGTACACTGGAGTATGGTTGATAACTCGTTGTAGTTCACTGATGAACAGTGGTTATGATCTCAATGATTGGCTCATTTGTCTACTTGTACTCATTTTGAATGGAATAATTGCTCGAATTGTAGCCTTCTTTTGTTTGGTAATGTCACAAAAGAGGTGA	2970	0.3956	MIGDFRDRICTTAEIRYYFQSFFLKGSTSASYVKANKNCNLTSWVSGCEPGWSCSADQKIDLKKEIKDIPSRIDDCQPCCEGFFCPQGLTCMITCPLGSYCPLAKLNQTTGVCDPYSYQIPAGETNHTCGSADIWSGAVNNNNIFCSPGSYCPSPTRKVSCDKGYYCRMGSTHQNPCSRLSSCNPKTATQNMHAYGALIIVAMSTLLIFIYNCSDQVLATRERRQAKSREAAAKHVRETVQARERWKQARDLAKKGSEGLQKQLSRTFSRKKSTKQGPLFPSSKPEQSSKTNNKEPSNLTKIMHSIEDDGHDGFDFQIGDKNIKKQMPKGKNLHTHSQILRYAYGQIEKEKAQQEQNKNLTFSGLISMAAEGEEVNTRPPIEVAFNNLTLTLKGKNKHILRCVSGKIMPGRVSAVMGPSGAGKTTFLSALAGKARGCTMSGSILVNGKNESIHSYKKITGFVPQDDIVHGNLTVEENLRFSARCRLPADMPKPDKVLIVERVIESLGLQPVRDSLVGTIEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSSLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIVFLAKGGLTAYHGPVKKVEEYFAGIGIHVPDRVNPPDHFIDILEGLEKPTSGVTIETLPVRWMLHNGYPVPADMFHLADQIGTPASATTNETRSSKSTEETSDQSFIVEFREDLKNSIRIQGDHIEAIFSRTKDLSGRKTPSVAQQYRYFVGRVGKQLLREARLQAVDYLLLLVAGAILGTLAKVNDETFGPLGYTFTVISVSLLCKIAALRSFTMDKLQYWRESAAGISSLAHFLSKDTVDLFSTIIKPVVYLSMFYFLSNPRSTFGSNYIVLVCLVYCVTGMAYALAIFFQPSPAQLWSVLLPVVMTLIANQNRDTTFMKILVQLCYPKWALEAFIIANAERYTGVWLITRCSSLMNSGYDLNDWLICLLVLILNGIIARIVAFFCLVMSQKR*	990

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal3g4211	989	MobiDBLite	consensus disorder prediction	229	257	-	-
	Mal3g4211	989	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	383	624	IPR003439	GO:0005524
	Mal3g4211	989	Pfam	ABC-2 type transporter	581	988	IPR043926	GO:0140359
	Mal3g4211	989	MobiDBLite	consensus disorder prediction	229	298	-	-
	Mal3g4211	989	PANTHER	WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED	4	984	-	-
	Mal3g4211	989	ProSitePatterns	ABC transporters family signature.	524	538	IPR017871	GO:0005524
	Mal3g4211	989	Gene3D	-	372	619	IPR027417	-
	Mal3g4211	989	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	380	606	IPR027417	-
	Mal3g4211	989	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	4	984	-	-
	Mal3g4211	989	CDD	ABCG_EPDR	380	607	-	-
	Mal3g4211	989	Pfam	ABC transporter	402	551	IPR003439	GO:0005524
	Mal3g4211	989	MobiDBLite	consensus disorder prediction	260	298	-	-
	Mal3g4211	989	SMART	AAA_5	409	601	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal3g4211	Mal-Chr3	121259884	121265166	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal3g4211	361	603	Calmodulin-binding Proteins	AT2G36910	25.100	1.86e-09	60.1