Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4198 ATGAAAGAAAAAAGGAAAGGTTGCAATCCAAGTCCAACTGAGATGAATATGGAGTCAAAGAAGAAATTGAAAAATGTGAACAAGAGTGTGGATCCTCAGCTATGGCATGCAATTTCAGGAGGAATGGTGCAAATGCCAGAAGTTAACTCACAGATCTTCTACTTCCCTCAGGGTCACGCCGAGCATGCATGTGAGCCGGTGAATTTCAGTGCTTACTCCAAAATTCCTTCTTTCATTCCATGTAAAGTTGAAGCTATCAAATATATGGCTGATCGTGAGACAGATGAGGTGTATGCAAAACTCAGGCTTGTTCCTATGCATATTAACCAGGTTAGTTTTGATAATGATGGTGTTCCAGTTGCTCCCATCAACGTGTCTGAAACTAAGGATAAACATCAATCTTTTGCGAAAACCTTGACGCAATCTGATGCAAACAATGGTGGTGGCTTTTCTTGTCCTAGATATTGTGCAGAAACGCTTTTTCCTCGTTTGGACTATTCAGGTAGCCCTCCTTTTCAGGACATTTATCCCAAGGATGTTCATGGAGAAAAGTGGCATTTCAGGCACGTTTATAGGGGCACGCCGAAGCGGCATTTGTTGACAACTGGATGGAGTCCTTTTGTCAGTGACAAGAAACTTGCTTCTGGGGATTCAATTGTGTTTTTGAGATCTGAAAACGGCGATCTTCATGTTGGAATTCGGAGGGCTAAAAGGCGAAATAATGTTGGAGTCGATCCTTCATTAGGGTGGAAATCTGGTAGTGGAATTGGAATTTGTCCTGCACCACCATACGGAGGATTTACATCGTTTTCGGGAGAGGAAGATAATAAACTTCGAAGAAATGGTAAAGGCAATGGATTGCTAATAAGTGATGGAATGATGTGTAGGGGGAAGGTGAAAGCTCTAGAAGTTATTGAAGCAGTAAAACTCGGTACTAATATGCAGCCGTTTGATGTGGTTTATTATCCTCGGTCGGGTACTCCTGAGTTTTTTGTGAAAACTTCTTTAATTGGAATATCACTTCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGGCCATTGAAACTGAGGACTCATCAAGGATAAGTTGGTTTATCGGAACTGTTGCTTCTGTTCAGGCTGCTGATCCGGCATGGCCTGATTCTCTGTGGAGACTTCTCCAGGTTACATGGGATGAACCTGAGTTACTTAAAAATGTGAAAAGGGTGAATCCGTGGCAAGTTGAAATAGTGTCGAACATGCCTTCGATCCCTCTTTCCCCTTTCGTACCGCCAAGGAAGAAATTAAGATTCTCTGAACACCCAAATTTCCCACTTGATTGCCAATTTTCGATGCCAACTTTTCCAAACAACCTTCTAAGTCCTAATATTCCAATTTTTCATTTACCCGAAACTACTCCTGCTGGCATGCAGGGAGCCAGGCATAGTCATTTTGATCTTTCCTTACCAGACTTTCACCTCAATAAATTTCCATTAGGTCTCTTTAAGCCTAATTTCCAACCATTTAATCACACTGCTACAACGCCCATGATGGTCCCTAATTACTCGGAATTGCAAAAGCCAAACACCGGTGAGAACGTTTCATGCTTGCATTCGATATCAACTTCTACACAATCTTCAGAGAAACCAGATCATGTGAAGCCGCATCAGCTCGTGCTTTTTGGTCAAACAATACACATTGACGCTGGAAATGAAAATGCCGAAAAGAAAATGACTAACCACTTGTATGATCTTCATCTACAAGGCTTGCTGGAACGTTCATCTGGTGAGAGCTTAGAGTGGAATCCTAAGAACCAATCCGAAGAAACTTTGGCAGGAGAAACATCGGAGAAGAAACATTCAGCAACTTCATCAGAAAAGCTAGGAGGTTGA 1875 0.4208 MKEKRKGCNPSPTEMNMESKKKLKNVNKSVDPQLWHAISGGMVQMPEVNSQIFYFPQGHAEHACEPVNFSAYSKIPSFIPCKVEAIKYMADRETDEVYAKLRLVPMHINQVSFDNDGVPVAPINVSETKDKHQSFAKTLTQSDANNGGGFSCPRYCAETLFPRLDYSGSPPFQDIYPKDVHGEKWHFRHVYRGTPKRHLLTTGWSPFVSDKKLASGDSIVFLRSENGDLHVGIRRAKRRNNVGVDPSLGWKSGSGIGICPAPPYGGFTSFSGEEDNKLRRNGKGNGLLISDGMMCRGKVKALEVIEAVKLGTNMQPFDVVYYPRSGTPEFFVKTSLIGISLQIRWCPGMRFKMAIETEDSSRISWFIGTVASVQAADPAWPDSLWRLLQVTWDEPELLKNVKRVNPWQVEIVSNMPSIPLSPFVPPRKKLRFSEHPNFPLDCQFSMPTFPNNLLSPNIPIFHLPETTPAGMQGARHSHFDLSLPDFHLNKFPLGLFKPNFQPFNHTATTPMMVPNYSELQKPNTGENVSCLHSISTSTQSSEKPDHVKPHQLVLFGQTIHIDAGNENAEKKMTNHLYDLHLQGLLERSSGESLEWNPKNQSEETLAGETSEKKHSATSSEKLGG* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4198 624 MobiDBLite consensus disorder prediction 590 624 - -
Mal3g4198 624 Pfam Auxin response factor 309 389 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal3g4198 624 MobiDBLite consensus disorder prediction 1 20 - -
Mal3g4198 624 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Mal3g4198 624 Gene3D - 344 417 - -
Mal3g4198 624 Gene3D - 133 237 IPR015300 -
Mal3g4198 624 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Mal3g4198 624 CDD B3_DNA 134 235 IPR003340 GO:0003677
Mal3g4198 624 PANTHER AUXIN RESPONSE FACTOR 18 578 - -
Mal3g4198 624 SMART B3_2 135 237 IPR003340 GO:0003677
Mal3g4198 624 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 578 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal3g4198 624 SUPERFAMILY DNA-binding pseudobarrel domain 130 238 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4198 Mal-Chr3 120912481 120914824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4198 28 487 B3 DNA Binding Superfamily AT4G30080 54.352 6.29e-167 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal3g4198 B3 7.5e-19 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4198 3 120912481 120914824 Mal1g2841 1 40361260 40363731 ECH
Mal3g4198 3 120912481 120914824 Mal1g3051 1 45256666 45259616 ECH
Mal3g4198 3 120912481 120914824 Mal3g4198 3 120912481 120914824 ECH
Mal3g4198 3 120912481 120914824 Mal7g2085 7 74666843 74670270 ECH