Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4190 ATGGGTAATATCTCAAGCACCGGCGGCCACAACCGTCGTCAACACGGTGCCGCTTCCCGACGAACTCACCCACCACCACCACCACCTCCGGTAACACCACAACCCGAAATCACACCTCATCAATTCGTTTACCCTGGTGCCGCACCGTACCCGAATCCACCCATGCATTATCCTCAGTATCATTACCCTGGTTATTATCCACCACCAATGCCTATGCCTCATCATCATCACCATCCTCCGCATATGGATCCTGCTTGGGTTTCTCGGTATTACTCTTGTGGACCGGTCATGAATCAACCTGCACCGTTTGTTGAGCACCAGAAAGCTGTTACTATAAGGAATGATGTTAATATTAAGAAGGAGACGATTGTGATTTCACCGGATGAAGAAAATCCTGGTTTTTTTCTTGTTTCGTTTACCTTTGATGCTGCGGTTTCTGGGAGCATCACCATATTTTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACTAAGGAAAACCATCTTGCACCTGTGACTGTACAATTCCAGCAAGGTCTTGGACAAAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGAGGAGTCAGATTTAGTAAAGGTGGGTGACATGGATGTTTACCCTCTAGCATTGAAGGCAGATGCATCATCCGATAATCATGATGGATCAAATGAAACTGAGACATCTAGTAAAACGAACTCTCAGATAACTCAAGCGGTGTTTGAGAAGGAAAAAGGAGAATTTCGGGTAAAAGTTGTTAAGCAGATCTTGTCGGTGAATGGAATGCGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACGTGGATGACAATGAACAAGGAAAAGAGTGTGTGATCTGCTTGTCAGAGCCTCGCGACACAATTGTTCATCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGTATTGAGGTTCCAGACAAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGGGGACTGAGGAGTAA 1053 0.4539 MGNISSTGGHNRRQHGAASRRTHPPPPPPPVTPQPEITPHQFVYPGAAPYPNPPMHYPQYHYPGYYPPPMPMPHHHHHPPHMDPAWVSRYYSCGPVMNQPAPFVEHQKAVTIRNDVNIKKETIVISPDEENPGFFLVSFTFDAAVSGSITIFFFAKEDEGCILTPTKENHLAPVTVQFQQGLGQKFRQQAGTGINFSMFEESDLVKVGDMDVYPLALKADASSDNHDGSNETETSSKTNSQITQAVFEKEKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESDVDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGGTEE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4190 350 SUPERFAMILY RING/U-box 294 339 - -
Mal3g4190 350 ProSiteProfiles Zinc finger RING-type profile. 295 334 IPR001841 -
Mal3g4190 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 348 - -
Mal3g4190 350 PANTHER MAHOGUNIN 1 348 IPR045194 GO:0061630
Mal3g4190 350 Pfam Zinc finger, C3HC4 type (RING finger) 293 339 - -
Mal3g4190 350 MobiDBLite consensus disorder prediction 21 36 - -
Mal3g4190 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 344 IPR013083 -
Mal3g4190 350 SMART ring_2 295 333 IPR001841 -
Mal3g4190 350 MobiDBLite consensus disorder prediction 221 241 - -
Mal3g4190 350 MobiDBLite consensus disorder prediction 1 45 - -
Mal3g4190 350 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 294 334 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4190 Mal-Chr3 120769085 120773866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4190 84 314 C3H Transcription Factor Family AT3G09770 60.593 1.75e-95 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4190 - - aprc:113862864 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4190 3 120769085 120773866 Mal3g4190 3 120769085 120773866 ECH
Mal3g4190 3 120769085 120773866 Mal1g3035 1 44621089 44647832 PCT