Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4184 ATGCTTAATCTTATCGGTTTTTCGTTCTTGTCTATGGATTCGGTGCCTTATAGGGGATTGTTTCAGACATTCTTCGTACTCAATTATCTTTTGGTTTGCCAACTCCTCATTCTTCAACCCTTTGTTTCTGCTTCAGGAAATGCAGCTGAGTTGTTTGAGAAAGCATCTCAAAGTATAAAAGGGAAACATTATACTGAGGCTCTTAATGATCTAAATGCTGCAATAGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTCCCAGGCTTCAGTTCTTCGCAAGTTATGCAGATATGAACAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGACATTCAGTTGCCGAAAAGGAGCTCTCTCAGCTATTGCAGGCTCAAAGTGCGCTTGAAACAGCTCAGTCCCTCTATGAGTCAGCCAACTTCACAAAATCTTTGGAATACATCGATAAAGTTGTTCTTGTTTTCTCTCCAGCATGCACTAAGGCTAAGCTTCTTAAAGTGAGGTTGTTGATAGCTGATAAAGAGTATGAGGGTGCCATTGCTGAGTCTGGTTTTCTTCTCAAGGAAGATGAAAACAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCACGATGTTGCTACAAGGCATTACCAGAAAGGTCTTCGCCTAGATCCTGAGCATAGTGAACTGAAAAAAGCATACTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCCGAAGATAATGCGAGTAAGGGCAAGCTACGGGTGTCAGTGGAGGAATTCAAGGTCGCACTTGCTGTCGACCCTGACCATCTTGCACATAATGTACATCTTCATCTTGGCCTATGTAAAGTGCTAGTCAGGCTTGGCAGAGGAAAAGATGCCTTGAACAGTTGTAGTGAAGCTCTTAAGATTGATGAGGAGCTTATTGATGCCCTTGTTCAGAGGGGAGAAGCTAAACTCTTGACGGAGGACTGGGAGGGAGCTGTTGAAGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGATATGAATATTCGTGAAGCATTAATGAGGGCTGAAAAAGCTTTAAAAATGAGCAAACGCAAGGATTACTACAAGATTTTGGAAATTTCAAAACATTCTTCCGCTGCTGACATAAAACGCGCATACAAGAAACTTGCCTTACAATGGCACCCGGATAAGAATGTTGACAATAGAGAAGAAGCAGAGGCTAAATTCCGAGAAATCGCTGCTGCATACGAGGTTCTAAGTGATGAAGACAAACGCACAAGATACGACAGAGGAGAGGACCTTGAAGAGTCGGGAATGGGTGGCGGCGGCGGCGGAGGTTTCAATCCCTTCGGTGGTGGTGGACAGCAATTTCACTTTACTTTTGATGGTGGCTTCCCCGGTGGAGGCTTTCCCGGCGGGGGCGGCGGCTATGAATTTCATTTTTGA 1455 0.4323 MLNLIGFSFLSMDSVPYRGLFQTFFVLNYLLVCQLLILQPFVSASGNAAELFEKASQSIKGKHYTEALNDLNAAIEADPNLSEAYLSQASVLRKLCRYEQSERSYKKFLELKPGHSVAEKELSQLLQAQSALETAQSLYESANFTKSLEYIDKVVLVFSPACTKAKLLKVRLLIADKEYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVSVEEFKVALAVDPDHLAHNVHLHLGLCKVLVRLGRGKDALNSCSEALKIDEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREALMRAEKALKMSKRKDYYKILEISKHSSAADIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEESGMGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGYEFHF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4184 484 ProSiteProfiles dnaJ domain profile. 369 435 IPR001623 -
Mal3g4184 484 Pfam Tetratricopeptide repeat 198 230 IPR013105 -
Mal3g4184 484 SUPERFAMILY Chaperone J-domain 362 471 IPR036869 -
Mal3g4184 484 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 10 484 IPR044620 -
Mal3g4184 484 SMART tpr_5 315 348 IPR019734 GO:0005515
Mal3g4184 484 SMART tpr_5 48 81 IPR019734 GO:0005515
Mal3g4184 484 SMART tpr_5 82 115 IPR019734 GO:0005515
Mal3g4184 484 SMART tpr_5 197 230 IPR019734 GO:0005515
Mal3g4184 484 SMART tpr_5 281 314 IPR019734 GO:0005515
Mal3g4184 484 Pfam Tetratricopeptide repeat 62 115 - -
Mal3g4184 484 SMART dnaj_3 368 427 IPR001623 -
Mal3g4184 484 CDD DnaJ 369 424 IPR001623 -
Mal3g4184 484 ProSitePatterns Nt-dnaJ domain signature. 412 431 IPR018253 -
Mal3g4184 484 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Mal3g4184 484 Coils Coil 405 425 - -
Mal3g4184 484 Pfam DnaJ domain 369 432 IPR001623 -
Mal3g4184 484 Gene3D Tetratricopeptide repeat domain 44 366 IPR011990 GO:0005515
Mal3g4184 484 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Mal3g4184 484 Gene3D DnaJ domain 367 475 IPR036869 -
Mal3g4184 484 SUPERFAMILY TPR-like 63 364 IPR011990 GO:0005515
Mal3g4184 484 PRINTS DnaJ domain signature 371 389 IPR001623 -
Mal3g4184 484 PRINTS DnaJ domain signature 407 427 IPR001623 -
Mal3g4184 484 PRINTS DnaJ domain signature 389 404 IPR001623 -
Mal3g4184 484 PRINTS DnaJ domain signature 427 446 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4184 Mal-Chr3 120677416 120682356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4184 365 432 C2H2 Transcription Factor Family AT1G74250 45.833 7.16e-10 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4184 3 120677416 120682356 Mal3g4184 3 120677416 120682356 ECH