Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4182 ATGAATATTCTTGGTGACCCCTTTTCACTATCATCTTCCACTGGAGGTTTTGACAAAATTCGAAACTCAAACCCTACCCCTAATCCACCACAAGCCAACAAAAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAAGTGATTGCTCTTTCTCCAAAGACTCTAATGGCAACGAACCGATTCGTCTGTGAAATATGCAACAAAGGGTTCCAAAGGGATCAAAATCTTCAGCTTCATAGAAGAGGTCACAACCTACCATGGAAGCTAAAGCAAAGGTCAAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGAGTTGTGTCCACCACGACGTGGCGAGGGCGTTGGGTGATCTCACCGGAATAAAGAAACATTTTAGTAGAAAACATGGTGAGAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACACTCTTCTCTAGGAAGGATAGCTTTATTACACACAGAGCTTTCTGCGACGCATTAGCTGTAGAGAGTGCAAGACACAACTCATCTCCTACAACTCTAAATTTCCAGAATGAAGAGTCAAATGTGATGAACACACAAACTAGTTTGCCACATGGATTAATATCAACTCAAGGAATTCAAAATCTTCCACAATTTAATCCACATGTAGGATTTCATGAGCAAAGACCAAACTTATCATTGTGGTTGAACCATGAAAATCAACAGATTAATCATCATTCACATTCACTTGATCATGTTTCATCCGGTTTTTCTGATGTTATGCAAATGGCACAAAGTAATACTCCAATGTCAGCTACTGCACTTCTTCAGAAAGCAGCTCAAATGGGTTCAACAAGAAGCACTACTAATCCTAATTCCATTTTTAGTGCAAGTTTTGGTGTAATGACTTCATCTTCTACACAAACAAGTAGTAGTGGTAGTGCAGCTATGGTTGGTAATGGTAATTCTAGTGGATTTAGAGATTTTCTTGGAGTGAGTAACCATCAATTTCTACCTCAAGAGCTTGCAAAGTTTGCTTCCATAAGTTCATCGATGATGAGTTTAAATCAATTCAATGATGGGGGGTGCATCAATGAAAATTAA 1155 0.3905 MNILGDPFSLSSSTGGFDKIRNSNPTPNPPQANKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKSCVHHDVARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAVESARHNSSPTTLNFQNEESNVMNTQTSLPHGLISTQGIQNLPQFNPHVGFHEQRPNLSLWLNHENQQINHHSHSLDHVSSGFSDVMQMAQSNTPMSATALLQKAAQMGSTRSTTNPNSIFSASFGVMTSSSTQTSSSGSAAMVGNGNSSGFRDFLGVSNHQFLPQELAKFASISSSMMSLNQFNDGGCINEN* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4182 384 Gene3D Classic Zinc Finger 118 196 - -
Mal3g4182 384 SMART c2h2final6 63 85 IPR013087 -
Mal3g4182 384 SMART c2h2final6 139 159 IPR013087 -
Mal3g4182 384 SMART c2h2final6 104 134 IPR013087 -
Mal3g4182 384 MobiDBLite consensus disorder prediction 1 35 - -
Mal3g4182 384 MobiDBLite consensus disorder prediction 1 46 - -
Mal3g4182 384 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Mal3g4182 384 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Mal3g4182 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Mal3g4182 384 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 22 333 - -
Mal3g4182 384 Gene3D Classic Zinc Finger 41 117 - -
Mal3g4182 384 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 333 - -
Mal3g4182 384 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4182 Mal-Chr3 120643659 120645904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4182 285 365 IDZ Gene Family AT5G03150 36.765 1.66e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g4182 zf-C2H2 0.0037 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4182 K25870 - gmx:100812495 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4182 3 120643659 120645904 Mal3g4182 3 120643659 120645904 ECH
Mal3g4182 3 120643659 120645904 Mal1g3032 1 44507115 44509270 PCT