Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4177 ATGGTGAAACTTGATGAGTCTCTTGTGATAAATTTAAGGAATTGTGGCGAGTTTTTAGGTTATGGCATTGTGGTTGTCTTGCATAATCATTTTGAGTGGATTTGTTTGAGCAATATGTGTGGTAGTGTTATGGGGCATAGGCACTTATACAATGCTTCTCCAATGTTTGAGGGTGAGGCTGACCCGAATTGGAATCATATGCATACTGATCAACATCATGTGAACCATGGTGGGACTAGCTCTTCAGAAAATGGTTCTTTTATTTATCCTGTGGAAAATATATCTATGGATAACATTTATTTCCCTTCTCATTGGAACGCCAACACAAGGTCAAATGGATATGCACCCTCAGGCCCCAATATTGAAGTACCACCTCCTCATCAATTGGACACATCGGGCTCTTCTACTAACGATCATTTTATGCATTCATCTAGTGCTGGACCTTTCTTTTCAGTGTCTGAAAACTTTGTACACCAGCCATCTTCTTCCAATTATGACAGACAAGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGGCATCACAAGAGGAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTTCCAGTGGATATTTCAATGCTGGGAGTTCAACTGATCTTCCTATACCTCCAGAATCATGGCCAGATAAACCAAATATGGATTCTCAATATATGCCCTGGGATCATGTTGCTATGGCACCCACATTCAGAGGTCCTGGTCTCTCAATTAAGGGTGAGAGTTCTGTAAGGAATGTTAGGAGCCGTTCTTCACTTGATTTGGAATCAAACCTGTCTAGGACCCATTTATCAAGTAACCATTCACACAGCTCGTACCCTACTGTCCCACCAGTTGGGCATCCTAGCTTGGCGGAGCTTTCAGCTCAGGTTTCCACATCTTTGACAAGGGATTGGAGCCAAATGAACGTAACTCCTGCTAATGGAAGAGTGTTATTACCAGATGCTAGTACCTTTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCTGCTGCTGCTAGTAATGCTACTGTAGATGTTGGAAGCTTCCATCATGAATTTGGAACAAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAGACTGCTAGGGGAGCTCGAAGTAATTACTCTCAGAGATCCACTCCAGCTTATAGAGCTTCTTCAAGCTTGCGCTTGGGACATGCGACGCCATCAGATAATGGATTGCCCATGGTAGCTGAAGGTTACTCTTCTAGACATCCAAGGCCGTTGACCACTGTTGGCTGGCGGAACAGTGATAGAAATGGAAGGTCAAGAATTTCTAGTGAAAGATATAGATCCCTGGCTGATCAGGCTGCTCTCCATGCAAGATTATCATCCTCCGAGGCACCGGGTTTCATGATTGTTGAGCGCGCCTCACTATATGGTTCTAGGAATGTGCTTGATCAGCACAGAGAAATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCTGAGGATGTTCTTTCTAAGTGTGTGACAGAAACAATATATTGTTCATCCGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTTAAAACATGTGGACATGACTACCATGTAAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAAGGTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1794 0.4309 MVKLDESLVINLRNCGEFLGYGIVVVLHNHFEWICLSNMCGSVMGHRHLYNASPMFEGEADPNWNHMHTDQHHVNHGGTSSSENGSFIYPVENISMDNIYFPSHWNANTRSNGYAPSGPNIEVPPPHQLDTSGSSTNDHFMHSSSAGPFFSVSENFVHQPSSSNYDRQAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPIPPESWPDKPNMDSQYMPWDHVAMAPTFRGPGLSIKGESSVRNVRSRSSLDLESNLSRTHLSSNHSHSSYPTVPPVGHPSLAELSAQVSTSLTRDWSQMNVTPANGRVLLPDASTFGLETSHFPVGNAAAASNATVDVGSFHHEFGTSRNPTTAQSFQNLTQTARGARSNYSQRSTPAYRASSSLRLGHATPSDNGLPMVAEGYSSRHPRPLTTVGWRNSDRNGRSRISSERYRSLADQAALHARLSSSEAPGFMIVERASLYGSRNVLDQHREMRMDIDNMSYEELLALGERIGQVNTGLSEDVLSKCVTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKGSALPEDKKDK* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4177 597 Pfam Ring finger domain 543 586 IPR001841 -
Mal3g4177 597 CDD RING-H2_TTC3 543 586 - -
Mal3g4177 597 MobiDBLite consensus disorder prediction 381 412 - -
Mal3g4177 597 ProSiteProfiles Zinc finger RING-type profile. 544 586 IPR001841 -
Mal3g4177 597 MobiDBLite consensus disorder prediction 381 407 - -
Mal3g4177 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 590 IPR013083 -
Mal3g4177 597 SMART ring_2 544 585 IPR001841 -
Mal3g4177 597 SUPERFAMILY RING/U-box 535 589 - -
Mal3g4177 597 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 44 593 - -
Mal3g4177 597 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 44 593 IPR045191 GO:0061630
Mal3g4177 597 MobiDBLite consensus disorder prediction 251 289 - -
Mal3g4177 597 MobiDBLite consensus disorder prediction 111 138 - -
Mal3g4177 597 MobiDBLite consensus disorder prediction 256 289 - -
Mal3g4177 597 MobiDBLite consensus disorder prediction 428 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4177 Mal-Chr3 120549599 120552663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4177 44 596 C3H Transcription Factor Family AT2G37150 40.564 4.36e-107 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4177 - - gmx:100803627 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4177 3 120549599 120552663 Mal3g4177 3 120549599 120552663 ECH
Mal3g4177 3 120549599 120552663 Mal1g3025 1 44350039 44352230 PCT