Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4170 ATGGCCAACGACTCGTCGTTTTTGTTCTCCGGCATTCATTTCGATAGAAAGAAATTCGGCGCCGATATTGCACGGTTCCAGAAAAAAGACAGCGATAACAGTTTGGTGAAGATTCAGAGTGTGACAGAAGAAGCTGAAGAAAGCAAGGAAACAATAGAAGTTGTGTCTGCAAAGAAGAGGAAGCGCAAGAAAACCTCTTCTGAAGTGGTTGACGGATTCAGTGTGTTCCGAAGTTCCACATCCAAGTCAAATGAAGAAGTCCCAGCCGATGATGATGAGTCCATTCGACGGAAGAAAGAGCAAAATAAGCAACTTGAGCGTGATGCTATCTTCAGGAAGAATCATAACATTCATGTCGCCGGTTACAATGTGCCAACCCCACTCCAAAGCTTTGATGAGTTGAAAACAAGATATAAATGTCCATCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATTCAACGGCAGGCTATTCCAGTTCTCTTACAGGATCGTGAATGTTTTGCCTGTGCTCCTACCGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGGTGGCGCTCGAGCTGTTATCATTTGTCATAGCCGTGAATTATCTGGTCAAACATATCGAGAGTGCAAAAAGCTTGCCAAAGGAGAAAAGTTTCGCATCAAGTTAATGACAAAACATCTTTTAAGAAATGCTGATTTTTCAAAATTTTCGTGTGACATACTTATATCCACACCACTTCGATTATGCTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTTGAGTATTTTGTCCTTGACGAATCTGATAAGCTATTTGAGCCCCAATTGTTCAAGCAGATTGATTCTATTATCAAAGCATGCACTAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATCGTTGGCAGGAAGAATATGGCTTCTGATACAATTAAGCAAAAGTTAGTTTTTACCGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGGCAAAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTCTCCAAAGCAAGGAGCGCGCCAAGGAGCTGTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCAGTTGATAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGACGTGGTTGCTCGGGGAATGGATTTCAAAGGCATTAACTGTGTGATCAATTATGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGCGAAGCGATTACATTTTACACAGAGGAGGATATTCCATTCTTGCGGAATGTATCTAATCTAATGACATCCTCAGGCTGTGAAGTTCCATCTTGGTTGACGGAGTTGCGGTTGCAGAAGAAGAAGTGGAAAAAGCACCGACCTGAAAGAGATTCTATCTCAACCAAACCGAATCTACCCAAAAGTGATTCGATCTCAACCGAACCGGATCTACCGAAAAGTGATTCTGTCTCAACCAAACAGAAGTTGCAAAAGAAGAAGTGGAAGAAGCACCGATCCAAAAGAGATTCTATCTCAACCAAACCGGATCTACCCAAAACAGATTCGATCTCAACCAAACCGGATGTATAA 1758 0.4238 MANDSSFLFSGIHFDRKKFGADIARFQKKDSDNSLVKIQSVTEEAEESKETIEVVSAKKRKRKKTSSEVVDGFSVFRSSTSKSNEEVPADDDESIRRKKEQNKQLERDAIFRKNHNIHVAGYNVPTPLQSFDELKTRYKCPSYLLRNLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVCPMLMKLKAHAKGGARAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKHLLRNADFSKFSCDILISTPLRLCLAIKKKKVDLSRVEYFVLDESDKLFEPQLFKQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASDTIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVSNLMTSSGCEVPSWLTELRLQKKKWKKHRPERDSISTKPNLPKSDSISTEPDLPKSDSVSTKQKLQKKKWKKHRSKRDSISTKPDLPKTDSISTKPDV* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4170 585 SMART helicmild6 386 467 IPR001650 -
Mal3g4170 585 MobiDBLite consensus disorder prediction 526 547 - -
Mal3g4170 585 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Mal3g4170 585 SMART ultradead3 152 349 IPR014001 -
Mal3g4170 585 CDD SF2_C_DEAD 346 476 - -
Mal3g4170 585 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 506 IPR001650 -
Mal3g4170 585 Pfam Helicase conserved C-terminal domain 364 467 IPR001650 -
Mal3g4170 585 Gene3D - 334 510 IPR027417 -
Mal3g4170 585 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 479 IPR027417 -
Mal3g4170 585 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 525 - -
Mal3g4170 585 MobiDBLite consensus disorder prediction 49 69 - -
Mal3g4170 585 Gene3D - 73 333 IPR027417 -
Mal3g4170 585 MobiDBLite consensus disorder prediction 512 585 - -
Mal3g4170 585 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Mal3g4170 585 MobiDBLite consensus disorder prediction 81 107 - -
Mal3g4170 585 Coils Coil 38 58 - -
Mal3g4170 585 MobiDBLite consensus disorder prediction 84 107 - -
Mal3g4170 585 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Mal3g4170 585 MobiDBLite consensus disorder prediction 565 585 - -
Mal3g4170 585 CDD DEADc_DDX52 144 337 IPR044764 GO:0003724|GO:0005524|GO:0030490
Mal3g4170 585 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4170 Mal-Chr3 120440617 120446346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4170 127 505 Eukaryotic Initiation Factors Gene Family AT3G19760 29.659 7.60e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4170 K14779 - gmx:100800969 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4170 3 120440617 120446346 Mal3g4170 3 120440617 120446346 ECH