Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4163 ATGGGGAAGACAAGAGGAATGGGAGCTGCCCGCAAGCTGAGGAAACTCCGTATCAACCAACGGTGGGCAGATAAGCAATTTAAGAAATCTCATCTTGGGAATGAATGGAAGAAGCCTTTTTCTGGTTCATCCCATGCCAAGGGAATTGTTCTTGAAAAGATTGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCTAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCCTTTGTGCCAAATGATGGTTGCTTGAATTACATTGAAGAGAATGATGAAGTCTTGATTGCTGGATTTGGACGTAAAGGTCATGCTGTGGGTGATATTCCTGGTGTCAGATTCAAGGTTGTGAAGGTTTCTGGTGTCTCTCTCCTTGCTCTCTTCAAGGAGAAGAAGGAAAAGCCTAGGTCTTGA 429 0.4429 MGKTRGMGAARKLRKLRINQRWADKQFKKSHLGNEWKKPFSGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4163 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mal3g4163 142 Gene3D - 25 142 IPR012340 -
Mal3g4163 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
Mal3g4163 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Mal3g4163 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mal3g4163 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Mal3g4163 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Mal3g4163 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Mal3g4163 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4163 Mal-Chr3 120368579 120369809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4163 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 96.479 2.06e-99 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4163 K02973 - ath:AT5G02960 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4163 3 120368579 120369809 Mal1g3007 1 43956051 43957521 ECH
Mal3g4163 3 120368579 120369809 Mal3g4163 3 120368579 120369809 ECH
Mal3g4163 3 120368579 120369809 Mal1g3007 1 43956051 43957521 PCT