Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4162 ATGGCCCAAACCCAAACCCATTATAGTATAAAGCTTTGTATGCTAGGATTCAAAAAGCAGCCGCACGCCGCACAGGTTAGCCTCTTCTTGCTGCTTCCAACATCTTCAGTTAGCTTAGCTGTATGTACTTTGCGTATCTACATCTCCGTTCCGATCCCAACAATGTTTTCTCGTTTTCGGAAAAACCTCCCTTTTTGTCGTTCCTCCTACTCATCATCATCGCAAGTTCTCAAGTTTTTTATTAGGTTTAAAGCGCGTGAGTTCTCATCATTATCATCATCTTCTCCTCCTCCTTCGAGGAATGTCAAGGTTTTCGCATGGTGGGATGTTGACAGTTGTGGAGTGCCTTCTGACGTTAGCTTTTCTAAGGTAGTACCTTCAATTAAAGCAGCCCTTAGAGCTAACGGGATCATGGGTGAGGTTGAGATTGACGCTTGTGTCGATTTATATTCTCCAAAGGTCGACGAAGAGGCACATGAGACACTTATGTCAGCCGGCATTTCTATCTGGCGCATTTTTCCAGCTGAAAATAACAATTCCTATAGACGTCTTCTTATGAATCTTGAGGATTGGCTTTGCTTGAATCCTCCACCCGCACACCTCCTTTTGATATTTGCAACTATAATGTGGCAATGGTCTTCGATGCTCAAGGGGGAAGATCTTATAGGAAAACATTTCAACTATCCTCCTGATGATCCGTTTAATTCTTGGTATGGAAACTCAAATGTGCCTCTTAAAAACCCATTCTCAGTTGCTGAGCTGCACACATCATCACAAAATGCGGAGATTTACAAACCTTCCTCTGACATAAAGGTAGGTGAAGCTTCAAAGTCAGTTTCTAGGCAGGTCATGAAGATATTGAGTTCGCACCCTAAAGGGATCTCCATTGGAGACCTTCGTGCAAAATTGACAAAGTGTGATCCGCCTTTGGGTAAACGCTTCTATGGATATAAAAAGTTTTCCAACATTCTAATATCTATACCACATGTACAACTCGAGTATTTAGGAGAAGGTAATTTTTGGGTGTGTTTGGTCTCAACAAGGACATCAACTATTAAGAACAAGCAGGAGGACACCACTACAACTCAAAAGCTACACAATGATGTTAGTCGTCCTCGGAAACCTCATTGGGATAACATTAGGGTTTCAGTATGGTGGGACTTTGACAGTTGTCCCGTCCCTTCCGACGTTAGCTTTTCGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCTAACGGTTATAAGGGCCCTATTCATATTGACGCTTATGGCAATGTTTCTCATCTTTCAGAGATCCAACAAGAAGCACTTCTCTTCTCCGGCATTGATCTCCACCACATTTCTGGTGGAAAGAAAAACTCTCATAAATGGCTTATGGATTGGGCTTATTAA 1395 0.4222 MAQTQTHYSIKLCMLGFKKQPHAAQVSLFLLLPTSSVSLAVCTLRIYISVPIPTMFSRFRKNLPFCRSSYSSSSQVLKFFIRFKAREFSSLSSSSPPPSRNVKVFAWWDVDSCGVPSDVSFSKVVPSIKAALRANGIMGEVEIDACVDLYSPKVDEEAHETLMSAGISIWRIFPAENNNSYRRLLMNLEDWLCLNPPPAHLLLIFATIMWQWSSMLKGEDLIGKHFNYPPDDPFNSWYGNSNVPLKNPFSVAELHTSSQNAEIYKPSSDIKVGEASKSVSRQVMKILSSHPKGISIGDLRAKLTKCDPPLGKRFYGYKKFSNILISIPHVQLEYLGEGNFWVCLVSTRTSTIKNKQEDTTTTQKLHNDVSRPRKPHWDNIRVSVWWDFDSCPVPSDVSFSNVAPSIMGVLRANGYKGPIHIDAYGNVSHLSEIQQEALLFSGIDLHHISGGKKNSHKWLMDWAY* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4162 464 Gene3D - 274 345 IPR041966 -
Mal3g4162 464 CDD LOTUS 277 344 - -
Mal3g4162 464 PANTHER LIMKAIN B LKAP 68 205 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal3g4162 464 PANTHER LIMKAIN B LKAP 379 461 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal3g4162 464 PANTHER LIMKAIN B LKAP 206 371 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal3g4162 464 Pfam OST-HTH/LOTUS domain 277 341 IPR025605 -
Mal3g4162 464 ProSiteProfiles OST-type HTH domain profile. 275 346 IPR025605 -
Mal3g4162 464 PANTHER EMB|CAB71880.1 68 205 - -
Mal3g4162 464 PANTHER EMB|CAB71880.1 379 461 - -
Mal3g4162 464 PANTHER EMB|CAB71880.1 206 371 - -
Mal3g4162 464 CDD PIN_limkain_b1_N_like 381 463 - -
Mal3g4162 464 CDD PIN_limkain_b1_N_like 103 205 - -
Mal3g4162 464 Pfam NYN domain 381 459 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4162 Mal-Chr3 120349763 120356063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4162 374 447 C2H2 Transcription Factor Family AT3G62850 32.432 2.28e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4162 - - mtr:MTR_8g011120 334.724