Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4142 ATGGGTTGGATTCCATGTTCTGGAAATTCAGGAACCAAGAAGAAGATTGTGAAGATGGAAGTTCAAGATAGTGTTGTTGCTCCTCAGATTAAAGCAACCCCAGGGAAGTTGAAGAGGAATTCATCAACAAATTCCAAAGATACATCTAAAAATGGGAACACCGAACACATTGCAGCACAAACTTTCTCATTCCGCGAGTTAGCAACTGCAACTAGAAATTTCAGAGCAGAATGTCTTTTGGGGGAGGGGGGCTTTGGTAGAGTATACAAAGGGCACCTGGAAAGTATTAATCAGGTTGTCGCAATCAAGCAACTTGACCGAAACGGACTCCAAGGGAATAGGGAATTCCTTGTTGAAGTATTGATGCTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGCGCCGATGGAGATCAAAGGCTTTTAGTTTATGAATATATGCCATTAGGATGCTTGGAAGATCACTTGCATGAGATTTCTCCTGGCAAGAAACGGCTTGACTGGAACACACGAATGAAAATAGCTGCCGGGGCAGCAAAGGGGTTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATATACCGAGATTTGAAGTGCTCCAACATTTTGCTAGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCCAAACTTGGCCCGGTCGGAGAAAACACCCATGTATCGACAAGAGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCGATGACCGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTTGAAATAATTACAGGAAGGAAAGCAATTGACTATTCGAAATCTGCAGCAGAACAGAATCTTGTCGCATGGGCTAGACCATTGTTCAAAGATCGAAGGAAATTTTCACAAATGGCTGATCCTATGCTTCAAGGTCAGTATCCTTCAAGAGGGTTATACCAGGCCCTTGCAGTTGCAGCAATGTGTGTTCAAGAACAAGCTAATATGCGTCCGGGTATAGCTGATGTTGTCACGGCTTTGTCTTACCTTGCTTCACAAAGTCATGATCACAATACAGTCCAAAATTCTCGCCTCGCTCCTAGTACTCCTCCTAGAACCAGGAGAGGACGATGA 1137 0.4336 MGWIPCSGNSGTKKKIVKMEVQDSVVAPQIKATPGKLKRNSSTNSKDTSKNGNTEHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGHLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGCLEDHLHEISPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDYSKSAAEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPGIADVVTALSYLASQSHDHNTVQNSRLAPSTPPRTRRGR* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4142 378 PANTHER OS07G0668900 PROTEIN 1 376 - -
Mal3g4142 378 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g4142 378 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 376 - -
Mal3g4142 378 MobiDBLite consensus disorder prediction 35 55 - -
Mal3g4142 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Mal3g4142 378 MobiDBLite consensus disorder prediction 356 378 - -
Mal3g4142 378 Gene3D Transferase(Phosphotransferase) domain 1 151 369 - -
Mal3g4142 378 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Mal3g4142 378 MobiDBLite consensus disorder prediction 356 370 - -
Mal3g4142 378 PIRSF ILK 12 365 - -
Mal3g4142 378 SUPERFAMILY Protein kinase-like (PK-like) 60 360 IPR011009 -
Mal3g4142 378 SMART serkin_6 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal3g4142 378 Pfam Protein tyrosine and serine/threonine kinase 78 347 IPR001245 GO:0004672|GO:0006468
Mal3g4142 378 MobiDBLite consensus disorder prediction 30 55 - -
Mal3g4142 378 Gene3D Phosphorylase Kinase; domain 1 43 150 - -
Mal3g4142 378 CDD STKc_IRAK 80 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4142 Mal-Chr3 120161579 120164239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4142 31 353 Glycoside Hydrolase AT3G07070 67.492 2.68e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mal3g4142 PK_Tyr_Ser-Thr 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4142 - - gmx:100818024 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4142 3 120161579 120164239 Mal1g1656 1 21680092 21684167 PCT
Mal3g4142 3 120161579 120164239 Mal1g2978 1 43237280 43241519 PCT