Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4108 ATGAGTGACTCATTGGCAAGTGATAATAATAAACTGGGTGATTCCCCAGCTGTTGATATAACCGGCAAGATCATGGTTGTTATCATAATAGCTCTCTTCATGGTTATTGTTACTTTTCTTTTCTTCCATCTTTTTGCCAAGGGATTCTGGTGGACCCATACCCATAGCCATAGCCAGAACAATTCACAATCCCGAAGGCGCAGGCGGAGTGGTCAAGACGGTGGTGGTCTTGATCCTTCGTTGCTCAAGTCCCTACCCGTATTGATATTCAATTCAAAAGAAGATGGTTTGGATTTGGAGTGCTCGGTTTGCCTGTCGGAAGTGGTTGAAGGAGAAAAGGTGAGGGTTTTGCCCAAATGCAATCACAGGTTTCACATAGATTGCATTGATATGTGGTTCCATTCCCATTCCACCTGCCCTCTTTGCAGGACCACACTTGCCGCACCTGCAACTCCTCCCTCCTCAGTAGTAGTAGCTGTAGAAGCTGCTGCTGCTGCTGCTTTTCCCACAAATGTCTTGATTTGGGGCAACCACAACCAAATAACTTCTTCTTCTACTACTTCGGAACAAAATACTTCTTCTTCCTCATCCGCCGATAATAGTGATAATAATAGTAATGATGGAAATGGAATGTTAAGGATTGATATACCCAATGAGTGTGACTGTGAGGTCACTACTTCATCATCATCATCATCATCATCACCCTTGGCTTTCACAGAAGGGAGATTAAAGTCATTGAAAAGGCTTTTAAGCAGCAGCAGCAGAGGCATAATGAGCCTAAATCCTTGGAGTCCCGCTTCTTCTTCAGCTACCACTGCTACACATGTCCAACAACAAACAAAGCCAAAGGACGCAGCAGGACAAAGCTAG 870 0.4437 MSDSLASDNNKLGDSPAVDITGKIMVVIIIALFMVIVTFLFFHLFAKGFWWTHTHSHSQNNSQSRRRRRSGQDGGGLDPSLLKSLPVLIFNSKEDGLDLECSVCLSEVVEGEKVRVLPKCNHRFHIDCIDMWFHSHSTCPLCRTTLAAPATPPSSVVVAVEAAAAAAFPTNVLIWGNHNQITSSSTTSEQNTSSSSSADNSDNNSNDGNGMLRIDIPNECDCEVTTSSSSSSSSPLAFTEGRLKSLKRLLSSSSRGIMSLNPWSPASSSATTATHVQQQTKPKDAAGQS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4108 289 MobiDBLite consensus disorder prediction 257 289 - -
Mal3g4108 289 CDD RING-H2_PA-TM-RING 100 143 - -
Mal3g4108 289 MobiDBLite consensus disorder prediction 183 211 - -
Mal3g4108 289 MobiDBLite consensus disorder prediction 56 78 - -
Mal3g4108 289 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 259 IPR044675 -
Mal3g4108 289 Pfam Ring finger domain 100 143 IPR001841 -
Mal3g4108 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 149 IPR013083 -
Mal3g4108 289 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Mal3g4108 289 MobiDBLite consensus disorder prediction 183 212 - -
Mal3g4108 289 SMART ring_2 101 142 IPR001841 -
Mal3g4108 289 PANTHER RING-H2 FINGER PROTEIN ATL3 6 259 - -
Mal3g4108 289 SUPERFAMILY RING/U-box 81 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4108 Mal-Chr3 119790804 119791673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4108 19 251 C3H Transcription Factor Family AT1G53820 32.404 1.66e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4108 - - mtr:MTR_7g117540 355.525