Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4101 ATGATGGGTAGCAGCAGCAACAACAACAATGGATCATCATCATGGCAGTTTGGGGACACAACGCTGACCAAAGTGTTCGTTGGAGGTCTTGCCTGGGAGACTCCCAAAGACACGCTGAGAGAACACTTCCAAAAATACGGCGACATCCTTGAAGCTGTCATCATTTCTGATAAGCTTACCGGTAGATCCAAAGGCTACGGGTTTGTAACATTCAAGGAAGCTGAGGCGGCGAAGAAGGCTTGCGAGGAATCAAGTGTGATCATCAATGGTCGCCGAGCCAACTGCAATATCGCATATCTGGGTGCTCGCCGTCCAAGGTCGTCGTCTTCAGCACCCACCACTCCTCCTCCAAGTCCATACACACAAGGAGGAGGTACGAAGAACCACCAGCAGGTTCAGTGGTATTATCCGGTGGGAACACCCACACCTCCTTCCCCATTCCATCATCATCATCACCCTGCCCTTCCTTTCTACGGGTACAATCCCACCTACATTGCAACAGATCATATGAATTACAATTACAATTACAATTACAATTACAACTATAACTACAATCAGAAGCTGAGCTATGGTCATGGAATGGGTGGGGGCTACGTGTACCCGAGGCAGGCTATTGTGGGTGCGATGCCAGTGATGTACTACAGATCAACCGAGGCTATGGGTGTCCCTGCAGCACCTCAATTCTTCCACCCAAGTCATTATTCCCCATCCATCACTCCAAGTCCAGTTGGCACAGGTGAATGCTTCAAAAGGATAGTGGTATGA 765 0.4915 MMGSSSNNNNGSSSWQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGDILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEESSVIINGRRANCNIAYLGARRPRSSSSAPTTPPPSPYTQGGGTKNHQQVQWYYPVGTPTPPSPFHHHHHPALPFYGYNPTYIATDHMNYNYNYNYNYNYNYNQKLSYGHGMGGGYVYPRQAIVGAMPVMYYRSTEAMGVPAAPQFFHPSHYSPSITPSPVGTGECFKRIVV* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4101 254 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 14 236 - -
Mal3g4101 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 112 IPR000504 GO:0003723
Mal3g4101 254 PANTHER GEO13361P1-RELATED 14 236 - -
Mal3g4101 254 Gene3D - 3 112 IPR012677 -
Mal3g4101 254 CDD RRM_RBM24_RBM38_like 23 98 - -
Mal3g4101 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 87 IPR000504 GO:0003723
Mal3g4101 254 MobiDBLite consensus disorder prediction 104 127 - -
Mal3g4101 254 SUPERFAMILY RNA-binding domain, RBD 22 188 IPR035979 GO:0003676
Mal3g4101 254 SMART rrm1_1 24 96 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4101 Mal-Chr3 119728813 119730595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4101 19 161 C2H2 Transcription Factor Family AT2G19380 28.767 1.15e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4101 - - mtr:MTR_7g117495 318.161