Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4098 ATGGAAGAAGTGAAAGGGTATTGTTCTGATAGCTGTAGGGAGGAAGAGGAGGAAGAGGAAGGTGCAGAAGCGATCATCGCAATCACTGGCAGCAGCAGCAGCAGCCGCAGTAGGTTACAGTTACAGACGTCACAGCAGAAAGAAGAAGAAGATGCAGCGGTTGGGAATTTGAATAGAATGAATGAGGAGGAGGAGGTAGATTTGATGGAGTTGAGACTGGGAGGAGGGGGGAGGAATAGCAAGGGAATTAGTGAGGAAGGAATAGGAGGAATAGGAAGTTGTTTAAAGGATGAGGAGGAGGAGGAGGCAGGAGCAGTAGAAGTAGAAGTAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGTGATGTAGGGAAACTGAATCGACTTGTGATACCAAAGCAGCACGCAGAGAAGTACTTTCCTTTGGATTCCTCAAGTAACGAGAAAGGGCTTCTCCTGAATTTTGAAGATAGGAATGGGAAGATGTGGCGGTTCAGGTATTCTTATTGGAACAGTAGCCAGAGCTATGTGATGACTAAAGGGTGGAGCCGTTTCGTTAAGGAGAAGAAACTTGATGCAGGTGACATTGTATCATTCCACCGTGGACGTGCTGAATTGTACAGACACAGGTTGTACATTGATTGGAGGCCAAGGGCTCATCACTCTCAGTACCTCATCCCTCAATATCATCCTCCTCCTTTCTATCTTCACCCCAGTTCATCATTATACTCCCCCCAATATTCCCACCTTCCTAATCCTACTCAATATTACAACACCAATTTCTATAATAATACTACTACTACTACTACACTTCATCAACAACAACAACAACAACAACAGTACCACCACCCTACTGCTGATCACCTTGTTAATAACAACAATAATAATAATATGAATAATCCCCTCTATTATCTCGCCTCTTCCCCAATTACGCCACCATCAACAGCAACAGGTGATCATCAACACTTGCAAGGATTGGTGGGGCAAGGGCAACAACAACAATATAGGAGAAATGTCAATGTCCAGATGAATATGATTATTGATTCAGTGCCGGTAGCACATCACCACCGCAGTGGCAGTATCATGACCCCCACTAATAGTGGAAAACGGCTGAGGCTATTTGGGGTCAACATGGAATGCGATTCTTCTTCAACTCCACCACATGTGGCAATGCCTAATCATCCACTTTCACCCTCTTCAACAACAACAACAACTTCGGTGCTCTTTGATTTGGATCCTTCTAATTCCCAATATCACCGCCACTGA 1278 0.446 MEEVKGYCSDSCREEEEEEEGAEAIIAITGSSSSSRSRLQLQTSQQKEEEDAAVGNLNRMNEEEEVDLMELRLGGGGRNSKGISEEGIGGIGSCLKDEEEEEAGAVEVEVVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGRAELYRHRLYIDWRPRAHHSQYLIPQYHPPPFYLHPSSSLYSPQYSHLPNPTQYYNTNFYNNTTTTTTLHQQQQQQQQYHHPTADHLVNNNNNNNMNNPLYYLASSPITPPSTATGDHQHLQGLVGQGQQQQYRRNVNVQMNMIIDSVPVAHHHRSGSIMTPTNSGKRLRLFGVNMECDSSSTPPHVAMPNHPLSPSSTTTTTSVLFDLDPSNSQYHRH* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4098 425 MobiDBLite consensus disorder prediction 386 417 - -
Mal3g4098 425 MobiDBLite consensus disorder prediction 279 301 - -
Mal3g4098 425 CDD B3_DNA 116 209 IPR003340 GO:0003677
Mal3g4098 425 MobiDBLite consensus disorder prediction 1 57 - -
Mal3g4098 425 SUPERFAMILY DNA-binding pseudobarrel domain 115 209 IPR015300 -
Mal3g4098 425 MobiDBLite consensus disorder prediction 386 425 - -
Mal3g4098 425 ProSiteProfiles B3 DNA-binding domain profile. 118 218 IPR003340 GO:0003677
Mal3g4098 425 MobiDBLite consensus disorder prediction 27 51 - -
Mal3g4098 425 SMART B3_2 118 223 IPR003340 GO:0003677
Mal3g4098 425 Pfam B3 DNA binding domain 118 207 IPR003340 GO:0003677
Mal3g4098 425 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 23 397 - -
Mal3g4098 425 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 397 IPR044800 GO:0003700
Mal3g4098 425 Gene3D - 111 229 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4098 Mal-Chr3 119654691 119656324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4098 93 387 RAV Transcription Factor Family AT2G46870 47.000 2.51e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal3g4098 B3 7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4098 - - mtr:MTR_7g117455 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4098 3 119654691 119656324 Mal3g4098 3 119654691 119656324 ECH