Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4085 ATGGCTGCCAACGCTGCCACTCTTTCTTTCTCTTTGGTGGCAACCTCTTTACTCAACCATAATAAACCACTACTTGGAGGTAGGTGCTCCAAACGATTCGTTTCATGTCCTTCTTTCTCGCGTCTTGTTGCTGCTCACACCACCTCCAATTCTGACTTCGCCTCTGCGGTGGAGGAACAACCACGGACGAAGCTGGGAAATCCGACCCAAGTTTATGTGTGCAATCTTCCCAGAACCTGTGACACTCAACACCTACTTCATCTCTTCACTCCTCACGGAACCGTTCTATCTGTTCAGGTTTGCCGAAATGCAGAGACTGGTGAGAGTAAAGGGACTGCTTTTGTCACAATGGGATCTTATAATGCTGCTAAAAATGCTGTTGCTGCATTGGATGGATGGGATGTTGGTGGCCGCGAAATGCGGGTTAAATTTTCAGTTCAGATGAATACTAAGAAGAAGAATTTAGAGACATTGAACTCACCTCCCGTCAGGACTATATACTATGAGGGTCCTTATAAGGTGTATGTTGGGAATCTTGCTAAGCATGCTACACCCGAAGACGTGAGACATCTCTTTGGTAGATTTGGAAGTGTGGCTAGTGTGAGGGTGTTGCAAGATTTGAAACAGGGAAAAAGCCGCGCCTACGCCTTTGTCTCTTATCTTTCTCAGAGAGAACGTGACGCCTCTATATCCCTCAATGGAACTGAATTCTGTGATCGAACTCTAGTGGTTAGAGAGAGTGTCAAGAAGACTATGACCTAA 762 0.4593 MAANAATLSFSLVATSLLNHNKPLLGGRCSKRFVSCPSFSRLVAAHTTSNSDFASAVEEQPRTKLGNPTQVYVCNLPRTCDTQHLLHLFTPHGTVLSVQVCRNAETGESKGTAFVTMGSYNAAKNAVAALDGWDVGGREMRVKFSVQMNTKKKNLETLNSPPVRTIYYEGPYKVYVGNLAKHATPEDVRHLFGRFGSVASVRVLQDLKQGKSRAYAFVSYLSQRERDASISLNGTEFCDRTLVVRESVKKTMT* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4085 253 PANTHER OS02G0815200 PROTEIN 57 251 - -
Mal3g4085 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Mal3g4085 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 141 IPR000504 GO:0003723
Mal3g4085 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 242 IPR000504 GO:0003723
Mal3g4085 253 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 57 251 - -
Mal3g4085 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 249 IPR000504 GO:0003723
Mal3g4085 253 Gene3D - 44 154 IPR012677 -
Mal3g4085 253 Gene3D - 155 253 IPR012677 -
Mal3g4085 253 SUPERFAMILY RNA-binding domain, RBD 62 152 IPR035979 GO:0003676
Mal3g4085 253 SUPERFAMILY RNA-binding domain, RBD 168 250 IPR035979 GO:0003676
Mal3g4085 253 SMART rrm1_1 70 143 IPR000504 GO:0003723
Mal3g4085 253 SMART rrm1_1 173 245 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4085 Mal-Chr3 119491464 119492625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4085 61 251 Eukaryotic Initiation Factors Gene Family AT1G22760 28.646 1.10e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4085 - - vun:114164610 276.174