Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4076 ATGTCAGAAGGTGCAGAGATCGATGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAAATGGATGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTGTTGAAGAACATGAATATGAGGAGACAGCGACAGAGGCTGGTCTGAAAGACCAATTTCCCGAAGGAGAAAAAAGTGACCATGGTGCTGAAGAAGATAAGCAAAAACCATCTCTCATTGATGAAGAGGAGAGAGAGAAGCATGATGAACTTCTTTCCCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGCGGACTTCCTCGGGATACATGTGACGATGATGTCAGGGAATTGTGTGAACCAATGGGTGATATTGTTGAGATTAAACTAATCAAAGACAGGGAGACTGGAGAAAGCAAGGGTTATGCTTTCGTGGGTTATAAAACAAAGGAGGTGGCACAGAAGGCAATCGATGATATACATAACAAGGAATTTAAGGGCAAAACTTTGAGGTGTTCACTGTCTGAAACCAAACACAGGTTATTCATTGGTAACATTCCAAAAACATGGACAGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCCGGGGTTGAAAGCATTGACCTCATAAAGGACCCTCAAAATCAAAGCAGAAATCGTGGGTTTGCTTTTGTTTTGTATTACAACAACGCATGTGCTGATTATTCACGACAAAAGATGTCAAGTGTGGGTTTCAAGCTAGACGGTATTACACCAACTGTTACATGGGCTGATCCAAAGGCCTCACCTGACCATTCTGCTGCTGCTTCACAGGTGAAAGCTCTATATGTGAAAAACATACCCGAGAACGTTACTACTGAACAACTAAAGGAGCTATTTCGTCGTCACGGGGAAGTAACAAAAGTGGTCATGCCACCTGGCAAAGCTTCAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACGGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATGCGTACAATCCTGGACTCCACCCTAACCATCTTCCACATCCTGGTTATGGTAACTTCTCTGGAAATCTTTATGGCTCTGTAGGGGCTGGATATGGTGTTGCTGCTGCTGCTGCTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGAGTACAGGTGCCAGGTCCCCGACCCCGCAGAAATGACCGGGGAAATGGTCCAGGCGGGCGTGGAGGAGGCAGTGGTAATGATGATGGAAATCGTAATAGAAGGTATCGACCCTATTAG 1440 0.4458 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSVEEHEYEETATEAGLKDQFPEGEKSDHGAEEDKQKPSLIDEEEREKHDELLSLPPHGSEVFIGGLPRDTCDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCSLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMSSVGFKLDGITPTVTWADPKASPDHSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRNDRGNGPGGRGGGSGNDDGNRNRRYRPY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4076 479 CDD RRM3_hnRNPR_like 279 357 - -
Mal3g4076 479 CDD RRM_SF 106 178 - -
Mal3g4076 479 SUPERFAMILY RNA-binding domain, RBD 94 184 IPR035979 GO:0003676
Mal3g4076 479 ProSitePatterns EF-hand calcium-binding domain. 40 52 IPR018247 -
Mal3g4076 479 SMART rrm2_1 105 178 IPR003954 GO:0003676
Mal3g4076 479 MobiDBLite consensus disorder prediction 439 479 - -
Mal3g4076 479 MobiDBLite consensus disorder prediction 1 110 - -
Mal3g4076 479 Gene3D - 185 265 IPR012677 -
Mal3g4076 479 MobiDBLite consensus disorder prediction 49 99 - -
Mal3g4076 479 Gene3D - 267 389 IPR012677 -
Mal3g4076 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 357 IPR000504 GO:0003723
Mal3g4076 479 SUPERFAMILY RNA-binding domain, RBD 184 359 IPR035979 GO:0003676
Mal3g4076 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 266 IPR000504 GO:0003723
Mal3g4076 479 PANTHER GEO13361P1-RELATED 2 477 - -
Mal3g4076 479 Gene3D - 9 184 IPR012677 -
Mal3g4076 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Mal3g4076 479 MobiDBLite consensus disorder prediction 8 48 - -
Mal3g4076 479 SMART rrm1_1 281 353 IPR000504 GO:0003723
Mal3g4076 479 SMART rrm1_1 185 262 IPR000504 GO:0003723
Mal3g4076 479 SMART rrm1_1 105 178 IPR000504 GO:0003723
Mal3g4076 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Mal3g4076 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 248 IPR000504 GO:0003723
Mal3g4076 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 350 IPR000504 GO:0003723
Mal3g4076 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4076 Mal-Chr3 119382437 119387578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4076 106 458 Eukaryotic Initiation Factors Gene Family AT2G23350 26.410 3.76e-18 85.5