Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4062 ATGGTTCTCGATTCATTGACGTCTGGTCCTGCTTTGGAAGCTATTTCTCAAATTATAGATACCGTTTCCGAGATTGTATATTCTGCTGGCGATGTCCTTGTGAATAAGGACAGTTTTAAGGAACTTGCAGCTTACTTGCAAAGGATTGCACCTATCTTAAAGCAATTGAGGAAAGAAAAGGTCAGTGATTCCGAGACATTCAACTATGCCATTGAGGTTCTGAATCGTGAAATCAAAGATGCAAAGAAACTGGTTCAAGAGTGTAGCAAGAAGAGCAAGGTATATCTTCTAGTGAACTGCAGAACCGTTTTTAAGCGCTTGAAACACAACACAAGCGAGATCAGTAGGGCACTTGGTCTTCTTCCTTTGGCTACATCAGGCCTTTCGGATGGAATAGTTGAAGAAATCAATATTTTATGTGACAATATGCAGGCAGCTGAGTTTAAGGCAGCCATATCAGAAGAAGAGATATTAGAGAAAATTGAATCAGCGATCCAGGAAAAGAATTTCGACCGCTCCTATGCAAATAATTTGCTGCTTCTCATTGCAGATGCTGTTGGGATTACAAAAGAGCGCTCAACACTAAAAAAAGAGCTTGAAGAGTTTAAAAGTGAAATTGAAAATGAGAAAGACCGGGCTGAAGCCATACAAATGGATCAAATCATTGCTTTGTTGGAAAGGTCTGATGCAGCCTCATCAACTAGGGAAAAGGAACTCAAGTACTTTGCGAAACGAAATTCTTTGGGTACTCAACCGTTGGAGCCTTTAAAGTCCTTTTATTGCCCCATTACAGGCGATGTTATGGTTGACCCTGTGGAAACTTCATCAGGGCAAACATTTGAGAGAAGTGCAATTGAAAAGTGGATTGCAGAAGGAAACAAACTGTGTCCTTTGACTTTCATTACTCTAGACAAGTCGATTTTGAGATCTAACAAAACCCTGAAACAATCGATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTTCAATGAGAGAGAAAATCCAGTCTGGAGATGAAGTTGGAGTATTACATTGTCTGCAAGCTCTCCAAGATTTGTGTGAACAAAAGGACCAGCATAGAGAATGGGTGGTACTGGAGAATTATATACCTGTTCTTATCCAAATTCTTGCTGAAAAAAACCGCGATATAAGAAATCACGTCCTTGTCATCCTTTGCATGCTGGTAAAGGATAATGAAGATGCCAAGGAAAGAATTGCAAATGTTGATAATGCAATTCAGTCTATTGTCCATTCTCTTGGGCGTCGTTTGGGGGAAAGGAAGTTGGCGGTGGCATTACTTCTGGAACTATCCAAATATGATTTGTTAAGAGAATACATTGGAAAAGTTCAAGGTTGCATACTACTATTGGTGACTATGTCTAGCAGCGAGGACAATCAAGCTGCCAGAGATGCAACAGAGTTACTTGAGAAGCTTTCATTCTCTGATCAGAATGTCATACAGATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTCAAGATGATTATGGTCAAAATTTTAGCAGAAATGGAATCAACAGACCACACTAAGGAGATCTTGTTTGACAGTGGTATTCTGCCTCCTCTTCTTCACTTGGTCTCACATAATGATGTTCAGATGAAATTCGGTGCCCTTAAAGCTCTTCAGAATCTATCTAGTTTAAAGAAAAATGGACTTGAAATGATTCGGCAAGGTGCAGCACGCCTATTATTTGGCATTCTTTTCCAGCACAGCCTTCCTTTCTCAAGTTTGAGTGAACACATAGCTCCCATAATTATGCAACTTGCTGCATCTACCATCGCTCAGGATATACAGACACCGGTTTCATTGTTAGAATCCGATGAAGATGTTTTTAACCTTTTCTCTTTAGTTAGCTACACAGTGCCTGATGTGCGACAATATATTATCCTGACTTTTTATGCCTTGTGTCAGTCTCCCTCAGCTTCATATATCAGGACCAAACTAAGAGAGTGCCCGTCGGTTCTAGTATTGGTCAAGTTGTTTGAGAATGAAAGCCTAAATCTTCGAGCAAGTGCTGTGAAGCTGTTTTCTTGCCTGGTAGAAAGTTGTGATGAAGCCACCGTACTAGAGCATGTGAATCAGAAGTGTATTGAGACTTTGCTCCAGATGCTGAAATCTTCATCTGATGAAGAAGAAATTGTTTCAGCTATGGGAATAGTACGCTTTCTTCCAAAAGTTCAACATATCACTCAGTGGCTTTTGGATGCCGGGGCGCTGCCAATCATTTGTAAATATATCCAAGAAGGGAAGGATAAAGATATCCAAAAGAGTAAGCTGGTAGAGAACTCTGTTGGTGCATTATGTCGTTTTACAGTTCCAACAAACTTGGAATGGCAAAAGAGTGTAGCTGGAACTAGGATTATAACTGTTTTAGTACAGTTGCTTGAAAGTGGAACTGCTCCAACAAAACAGCTAGCAGCACTTTCCCTAACTCAATTTTCCAAAAGCTCAAATGAACTGAGCAGTCCAATGCCTAAGCGCAAGGGATTTTGGTGCTTCTCAGCTCAGACAGAAGCTGGATGCTTAGTTCATGGTGGTGTATGCACCGTCGAATCATCGTTTTGCCTTTTGGAGGCTGATGCAGTGGGACCACTAGCAAAGACTCTTAGGGAATCTGATCTTGGAGTGTGTGAGACCTCTTTAGATGCTCTTCTAACTTTAATCGATGGGGAAAAGCTACAGAGTGGTAGTAAAGTGCTTGCAGATGAAAATGTCATACCAGTAATAATAAGATTTCTCGGTTCTCCTTCCCCCGGATTGCAGGAAAAGTCTCTTAATGCTTTGGAGAGGATTTTCCGGCTATTCGAGTTCAAACAGAAATATGGAGCTTCAGCTCAAATGCCTTTGGTTGACTTAACTCAGCGGGGTAATGGCAGCGTTAAATCCTTGGCAGCGCGAATATTGGCACATTTGAATGTGCTTCATGATCAGTCTTCATATTTCTAA 3003 0.4069 MVLDSLTSGPALEAISQIIDTVSEIVYSAGDVLVNKDSFKELAAYLQRIAPILKQLRKEKVSDSETFNYAIEVLNREIKDAKKLVQECSKKSKVYLLVNCRTVFKRLKHNTSEISRALGLLPLATSGLSDGIVEEINILCDNMQAAEFKAAISEEEILEKIESAIQEKNFDRSYANNLLLLIADAVGITKERSTLKKELEEFKSEIENEKDRAEAIQMDQIIALLERSDAASSTREKELKYFAKRNSLGTQPLEPLKSFYCPITGDVMVDPVETSSGQTFERSAIEKWIAEGNKLCPLTFITLDKSILRSNKTLKQSIEEWKDRNTMITIASMREKIQSGDEVGVLHCLQALQDLCEQKDQHREWVVLENYIPVLIQILAEKNRDIRNHVLVILCMLVKDNEDAKERIANVDNAIQSIVHSLGRRLGERKLAVALLLELSKYDLLREYIGKVQGCILLLVTMSSSEDNQAARDATELLEKLSFSDQNVIQMAKANYFKHLLQRLSTGPDDVKMIMVKILAEMESTDHTKEILFDSGILPPLLHLVSHNDVQMKFGALKALQNLSSLKKNGLEMIRQGAARLLFGILFQHSLPFSSLSEHIAPIIMQLAASTIAQDIQTPVSLLESDEDVFNLFSLVSYTVPDVRQYIILTFYALCQSPSASYIRTKLRECPSVLVLVKLFENESLNLRASAVKLFSCLVESCDEATVLEHVNQKCIETLLQMLKSSSDEEEIVSAMGIVRFLPKVQHITQWLLDAGALPIICKYIQEGKDKDIQKSKLVENSVGALCRFTVPTNLEWQKSVAGTRIITVLVQLLESGTAPTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCLVHGGVCTVESSFCLLEADAVGPLAKTLRESDLGVCETSLDALLTLIDGEKLQSGSKVLADENVIPVIIRFLGSPSPGLQEKSLNALERIFRLFEFKQKYGASAQMPLVDLTQRGNGSVKSLAARILAHLNVLHDQSSYF* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4062 1000 CDD RING-Ubox_PUB 259 299 IPR045210 -
Mal3g4062 1000 SMART arm_5 401 441 IPR000225 GO:0005515
Mal3g4062 1000 SMART arm_5 744 791 IPR000225 GO:0005515
Mal3g4062 1000 SMART arm_5 359 399 IPR000225 GO:0005515
Mal3g4062 1000 SMART arm_5 912 952 IPR000225 GO:0005515
Mal3g4062 1000 SMART arm_5 525 565 IPR000225 GO:0005515
Mal3g4062 1000 Pfam Armadillo/beta-catenin-like repeat 526 565 IPR000225 GO:0005515
Mal3g4062 1000 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Mal3g4062 1000 Coils Coil 185 219 - -
Mal3g4062 1000 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 6 95 IPR008808 -
Mal3g4062 1000 Coils Coil 71 91 - -
Mal3g4062 1000 SUPERFAMILY ARM repeat 331 990 IPR016024 -
Mal3g4062 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 332 IPR013083 -
Mal3g4062 1000 SUPERFAMILY RING/U-box 246 327 - -
Mal3g4062 1000 Gene3D - 9 125 IPR036537 GO:0007166
Mal3g4062 1000 Gene3D - 857 998 IPR011989 -
Mal3g4062 1000 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Mal3g4062 1000 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1000 - -
Mal3g4062 1000 Pfam U-box domain 259 325 IPR003613 GO:0004842|GO:0016567
Mal3g4062 1000 Gene3D - 333 627 IPR011989 -
Mal3g4062 1000 Gene3D - 628 849 IPR011989 -
Mal3g4062 1000 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Mal3g4062 1000 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4062 Mal-Chr3 119258531 119263481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4062 257 1000 U-box Gene Family AT1G76390 28.173 3.19e-55 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4062 - - gmx:100799969 1393.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4062 3 119258531 119263481 Mal3g4062 3 119258531 119263481 ECH
Mal5g1083 5 19188253 19192360 Mal3g4062 3 119258531 119263481 ECH