Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4057 ATGGGAAGAGCTCCTTGTTGTACAAAAGTTGGGTTACATAGAGGTCCATGGACTTCTCGTGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCAATGGAGATCACTTCCAAAAAGAGCTGGGCTTCTTCGATGCGGAAAAAGCTGCAGACTGAGATGGATGAACTATTTGAGACCAGATATCAAGAGAGGTAACATATCGCCCGAAGAAGATGATCTTATTATAAGAATGCATTCACTTCTTGGCAATAGATGGTCCCTTATCGCCGGAAGATTACCAGGACGTACGGATAATGAGATAAAGAATTACTGGAACACACATCTCAGTAAAAAGCTCAAAAACCAAGAACAACTAGAGAAGAATAAAAAGAAGCAGAAGAAGAAGAATGAGAAGAACAAAGTCATAACCAAAGTAGAAGAAGATTCAGAGAAGAAGACCTTAGTTTATGTACCAAAGCCTATAAGGGTTAAGAAGACTTTATCATCTATAATATCAAGAACTGATATTACCATTAACTTGGAATCCAAGTCAGTAACAACAAGCCAAGAAGAAGAAGAGCAAAGAGCAGAAACAAAAGAGGGAGACAATGATAGGTTTGGATTGTTCTTTGATGAACAGTACCATGAAGACTTGGTCAACAATGATGACATGGAATGCCAATCGGGTTTTCTTGAGAGGATGTATGAAGAGTACTTGCAGCTTTTGAAGAGTGAAGAGAATCATGAAAAAATGTTGGATTCTTTTGCTGAGTCCTTATTGGCGTGA 777 0.3874 MGRAPCCTKVGLHRGPWTSREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNISPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKNQEQLEKNKKKQKKKNEKNKVITKVEEDSEKKTLVYVPKPIRVKKTLSSIISRTDITINLESKSVTTSQEEEEQRAETKEGDNDRFGLFFDEQYHEDLVNNDDMECQSGFLERMYEEYLQLLKSEENHEKMLDSFAESLLA* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4057 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal3g4057 258 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal3g4057 258 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal3g4057 258 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal3g4057 258 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal3g4057 258 CDD SANT 16 61 IPR001005 -
Mal3g4057 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal3g4057 258 MobiDBLite consensus disorder prediction 180 199 - -
Mal3g4057 258 Coils Coil 112 145 - -
Mal3g4057 258 Gene3D - 14 66 - -
Mal3g4057 258 SMART sant 66 114 IPR001005 -
Mal3g4057 258 SMART sant 13 63 IPR001005 -
Mal3g4057 258 MobiDBLite consensus disorder prediction 183 199 - -
Mal3g4057 258 CDD SANT 71 112 IPR001005 -
Mal3g4057 258 Gene3D - 71 143 - -
Mal3g4057 258 PANTHER MYB-RELATED PROTEIN 308-LIKE 1 216 - -
Mal3g4057 258 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 216 - -
Mal3g4057 258 MobiDBLite consensus disorder prediction 118 137 - -
Mal3g4057 258 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4057 Mal-Chr3 119228764 119229761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4057 1 116 MYB Transcription Factor Family AT5G49330 75.000 7.46e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g4057 Myb_DNA-binding 1e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4057 3 119228764 119229761 Mal3g4057 3 119228764 119229761 ECH
Mal3g4057 3 119228764 119229761 Mal5g1096 5 19436742 19438091 PCT