Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4055 ATGAATGATCAGTTTCCTATTGGAATGCGTGTTCTTGCTGTTGATGATGACAGAACTTGTCTCAAGATTTTAGAGAGACTTCTCCAAAGGTGTCAATACCATGTGACCACTGCTCAAAGTGCACGAACGGCACTGAACTTGTTGCGAGAAAACAAAAACAATTTTGACCTAGTAATCACTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGTTTTCTGCAAATGATGATCCAAAGATGATGATGAAAGGAATTGATCATGGTGCTTGTGATTATTTGCTGAAACCTGTTACATTGAAGGAGGTACAGATGATTTGGCAACATGTAGTCAGAAAGAAGAAAACTAGCAAAATAAGCAATCATGATGTGCCTATTTCTTATAGTGGAATTGGAATAGATTTAAATTCTGATCAAAATGAAAAGCCATCTAGAAAAAGGAAGGATAAGTATGAAGATGATGTTGAAGAAGAGACTGAGGATGATCATGACAATGATGATCCAACACCACAGAAGAAGCCTCGAGTTACTTGGTCCCATGACTTACACCGCAAGTTTCTTGCTGCTGTTAATCAGTTAGGCGTTGAAAAGGCTGTGCCAAAAAAGATTTTGGAATTGATGAATGTTGAAAATCTTACAAAGGGGAATGTGGCCAGCCATCTCCAGAAATATAGACTCGGTCTGAAAAGAATTAGTTCTGGGGAAAACCAACAAACTAATATGGTGGCAAATTTAGGTAGTGATTCTGATACATCCAATTCAAGAATGAGTTCTCTCAGTGGAGTTGGAGGACATTTTCATACATTGAATGACTCTAGACAGTTTCATAGTCATAACAGTGCTTTCAGATCCTTTCCATCTGGTGGTGGTATGAGTAGCAGATTGAACACTCCTGCTAGTGTCAATATGCATGGATTGCCTACTCATAATTTAAACAACTCCTCAAATGATCCCCTTAAGTTTCAATCGGCCATAGCTCGCACCAATCCCAACCATGTTCAAAGAATGCCAATTTCTTCTGTAGCCTCTCAGCATTCACAGTTTTCTCACCCTTTACATGAAAAAAGAAGGTGCAATGACATTTGGTTAAGCACAATGCAATTACCTGAAACAAACTCTTACCTTCCACAAGTTCAACAGGCTCTTCTATGA 1194 0.3878 MNDQFPIGMRVLAVDDDRTCLKILERLLQRCQYHVTTAQSARTALNLLRENKNNFDLVITNVHMPDMDGFKLLELVGLEMDLPVIMFSANDDPKMMMKGIDHGACDYLLKPVTLKEVQMIWQHVVRKKKTSKISNHDVPISYSGIGIDLNSDQNEKPSRKRKDKYEDDVEEETEDDHDNDDPTPQKKPRVTWSHDLHRKFLAAVNQLGVEKAVPKKILELMNVENLTKGNVASHLQKYRLGLKRISSGENQQTNMVANLGSDSDTSNSRMSSLSGVGGHFHTLNDSRQFHSHNSAFRSFPSGGGMSSRLNTPASVNMHGLPTHNLNNSSNDPLKFQSAIARTNPNHVQRMPISSVASQHSQFSHPLHEKRRCNDIWLSTMQLPETNSYLPQVQQALL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4055 397 CDD REC_typeB_ARR-like 11 125 - -
Mal3g4055 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 243 IPR017930 -
Mal3g4055 397 MobiDBLite consensus disorder prediction 153 167 - -
Mal3g4055 397 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Mal3g4055 397 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 393 - -
Mal3g4055 397 MobiDBLite consensus disorder prediction 146 191 - -
Mal3g4055 397 Gene3D - 183 246 - -
Mal3g4055 397 Pfam Response regulator receiver domain 11 117 IPR001789 GO:0000160
Mal3g4055 397 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 393 IPR045279 GO:0009736
Mal3g4055 397 SMART REC_2 9 121 IPR001789 GO:0000160
Mal3g4055 397 Pfam Myb-like DNA-binding domain 189 239 IPR001005 -
Mal3g4055 397 SUPERFAMILY CheY-like 8 129 IPR011006 -
Mal3g4055 397 Gene3D - 8 137 - -
Mal3g4055 397 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 187 240 IPR006447 GO:0003677
Mal3g4055 397 SUPERFAMILY Homeodomain-like 185 244 IPR009057 -
Mal3g4055 397 PIRSF RR_ARR_type-B 1 396 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4055 Mal-Chr3 119199431 119202064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4055 3 343 Response Regulator Gene Family AT4G31920 53.039 6.32e-111 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mal3g4055 Response_reg 1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4055 - K14491 mtr:MTR_1g013180 577.785