Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4052 ATGGACAATCAACCAACACCATTCATTGAAGATGACGTAACCGCCGCTGATAGCCGGAGAGGTGGAACGCGCCACCCTGTCTACCGCGGTGTCCGGAAACGGCGTTGGGGAAAATGGGTTTCAGAAATTCGTGAACCTAAGAAGAAATCACGTATATGGCTAGGATCATTTCCGGTGCCGGAGATGGCTGCGAAAGCATACGACGTCGCAGTTTATTGCCTGAAAGGCCAAAACGCGCAACTAAACTTCCCCGACGAGGTGGAGAATCTACCGCTTCCGGCCACATATACAGCCAGAGACATTCAAGCTGCTGCAGCCAAGGCGGCGAGTATGATGAAGGCTTCACTGGATTGCATTGTTTCTGATGGAGATAGCGGTGGTGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTTATGGAGAGTGATTGTTGCTGGAGTTCTCCGAGTGGATCATCGTGGACTTGCTCCGGTGATATCACGGCGGCGTGGCAGGAAGTTGAGGAGCTTTTGGTGCAGCAACCTCATGTCGTGTCTATAATGAGTACTGTTAATAATGTTTCTTAA 567 0.5044 MDNQPTPFIEDDVTAADSRRGGTRHPVYRGVRKRRWGKWVSEIREPKKKSRIWLGSFPVPEMAAKAYDVAVYCLKGQNAQLNFPDEVENLPLPATYTARDIQAAAAKAASMMKASLDCIVSDGDSGGDDFWGEIELPELMESDCCWSSPSGSSWTCSGDITAAWQEVEELLVQQPHVVSIMSTVNNVS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4052 188 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Mal3g4052 188 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Mal3g4052 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 168 - -
Mal3g4052 188 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Mal3g4052 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 6 168 - -
Mal3g4052 188 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Mal3g4052 188 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Mal3g4052 188 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Mal3g4052 188 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Mal3g4052 188 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4052 Mal-Chr3 119184914 119185480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4052 23 160 AP2-EREBP Transcription Factor Family AT1G01250 63.014 1.22e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mal3g4052 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4052 K09286 - gmx:100802036 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4052 3 119184914 119185480 Mal3g4052 3 119184914 119185480 ECH