Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4049 ATGGAAGCCGAAACTCGAAGAAAAGTTGAAGAAATGGTGTTAGACATACTCAAAAAATCCAACATTGAAGAAACCACTGAATTCACCATCCGAGTTGCCGCTTCTGAACGACTCGGTATCGACCTTTCCGGCCCAGAAACCAAGCAGTTCGTCAGAACCATCATCGAGTCTTATCTTCTCTCCATCGCCACCAACGACGAGAATCCGCCACAAGAACCACCGCAAGAGGCCGTGAATGTTATACCCAAGGAAGTGCAACCGCCACAACCACAGCAGTTCAATAAGGTGATGGGTGTGAAACGCACAAACGACGACTCCGAAGACGTTATTTGTCAGCTATCAGCTAGGAGGAATGTGGCGGTTCGAGATTTCAAAGGGATGACATTGGTTTCAATTAGGGAGTTCTACACTAAAGATGGAAAACAGCTTCCCACTGCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCAGCTTTCAAGAATATTGTTCCCGCTATAGAGGAAGCTATCACAAAGTTGGAAGGAAGGATAAGATCAGAGCATAATGGCAAGAAAATTGGAGAAGTTTCAAATTCAGTTGCTGATGTTCCTGTTGAGTCCGTCCCTGTTGAGCCTGTCCCTGTTGAACCCGTCCCTATTGAGTCTGTCCCTATTGAGATCGTCCGTTTTGATGGGAAGAATTACCAAGTTTGGGCTGAACAGATGGAGTTACTCTTGAAACAATTGAAGATTAATTATGTTCTCACTGAACCATGTCCAAATGCTACATCAGGGGAAAAAAATGCAAGTGCTGGAGTGATTGCTGAAACGAAAGCTGCTGAAAAGAGATGGGTAAATGATGATTCATTGTGTCGTCGGAACATCTTGAACCATTTATCTGATAGTCTGTTCAACAAGTATGCGAATAGGAAAATGAGTTCTAAGGAGTTATGGGAAGAGTTAAAATTTGTTTATCTGTATGAGGAATATGGAACCAAGAGATCTCAGGTGAAAAAGTATATTGAATTTCAAATGGTTGATGAAAAAGCAGTTGTTGACCAAATTCAAGAACTTAATTGCATTGCGGACTCTATCGCTGCTGCTGGAATGCATATTGAAGAGAACTTTCATGTTAGTGTTATCATTTCAAAGCTTCCACTTTCCTGGAAAGACTTTTGCATCAAATTAATGTGCGAGGAGCATCTACCTTTCTGGAAGTTAATGGAACACATAACAAAAGAGGAAGAATATCGCAATGGAGTCAAACAAATGGGTGAACCTCCTTCTGACAATGTAAGATTTCACCATGCCAATAAAGGGGGACCCAGAGGAGCTGACATTATGCCACCACCAGGTTTTCAAAGGAAATTTGAATCTAATGGCAAGAACATAGCCTGTTATATTTGTGGGCAGAAGGGGCATATTTCTAAAAACTGTTGGAGATGGATGTAA 1431 0.4158 MEAETRRKVEEMVLDILKKSNIEETTEFTIRVAASERLGIDLSGPETKQFVRTIIESYLLSIATNDENPPQEPPQEAVNVIPKEVQPPQPQQFNKVMGVKRTNDDSEDVICQLSARRNVAVRDFKGMTLVSIREFYTKDGKQLPTAKGISLSSEQWSAFKNIVPAIEEAITKLEGRIRSEHNGKKIGEVSNSVADVPVESVPVEPVPVEPVPIESVPIEIVRFDGKNYQVWAEQMELLLKQLKINYVLTEPCPNATSGEKNASAGVIAETKAAEKRWVNDDSLCRRNILNHLSDSLFNKYANRKMSSKELWEELKFVYLYEEYGTKRSQVKKYIEFQMVDEKAVVDQIQELNCIADSIAAAGMHIEENFHVSVIISKLPLSWKDFCIKLMCEEHLPFWKLMEHITKEEEYRNGVKQMGEPPSDNVRFHHANKGGPRGADIMPPPGFQRKFESNGKNIACYICGQKGHISKNCWRWM* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4049 476 Pfam Zinc knuckle 458 472 IPR001878 GO:0003676|GO:0008270
Mal3g4049 476 ProSiteProfiles Zinc finger CCHC-type profile. 459 472 IPR001878 GO:0003676|GO:0008270
Mal3g4049 476 SUPERFAMILY Retrovirus zinc finger-like domains 448 472 IPR036875 GO:0003676|GO:0008270
Mal3g4049 476 SUPERFAMILY ssDNA-binding transcriptional regulator domain 110 172 IPR009044 GO:0003677|GO:0006355
Mal3g4049 476 PANTHER PBF68 PROTEIN 1 471 - -
Mal3g4049 476 Pfam DEK C terminal domain 5 59 IPR014876 -
Mal3g4049 476 PANTHER PBF68 PROTEIN 1 471 - -
Mal3g4049 476 Pfam gag-polypeptide of LTR copia-type 277 412 - -
Mal3g4049 476 Pfam Transcriptional Coactivator p15 (PC4) 111 162 IPR003173 GO:0003677|GO:0006355
Mal3g4049 476 SMART c2hcfinal6 458 474 IPR001878 GO:0003676|GO:0008270
Mal3g4049 476 Gene3D Transcriptional Coactivator Pc4; Chain A 101 178 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4049 Mal-Chr3 119136335 119139491 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Mal3g4049 Retrotran_gag_2 4.7e-16 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4049 - - cam:101512708 589.726