Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4048 ATGGACGGTGCCCGTCCTAAACTGGCGCCGAAGCGAATCGACGTTGCCGGTGAGAACCACATTCCGCGGCTTAAGAATCGAATCAACAGCGAAATTGAAGAGGCTGAACAACACAAGTCAAACGACAAGAAGAGGAAGATCGTCACCGTCACCGATCTCTGTAACAGATCGGAGTCGGAGCTGAATGGAAACTCGACGAAAAAGAAGAAGAAACCGATTCATCAAGAGAAGGAAGGTGATTTTGGCAAGGGATTAATGGATGTGTATAAGGTCAACAAAGCCAAAAATGGAGTTGAGGATACCAAAAAACAGGAGAAGGAAGGTGGTTGTGGCAAGGTCAACAAAGCCAAAAATGGAGTCAAAGATATCAAACAACGGGGTTTATCCAAAAAAGCTAAGAAGGGTGAAAGTTTGATGTGTCATCAGTGCCAACGGAATGATAAGAGTGGTGTTGTCTTTTGCTCAAGTTGCAACAAAAAGCGCTATTGTTACGAATGCATTGAGAACTGGTACCCAGGAAAAACCCGAGAGGAATTTGAGAATGTGTGTCCATTTTGTTTGGGCAATTGCAACTGCAAAGCTTGCTTACGGGAGTTTCCTGTGCTAATGGACCGTGAAGTAGATGCCAGTGTCAAATTACAGCGGCTCCTGTACTTGCTATCGAAAGCCCTGCCAGTTCTGAGGCATATCCACCGGGAGCAGAGCTTGGAATTAGAGACTGAAACCAAAATAAGGGGTAAGCAACTTCAAGAAATTGACATAACAAGAACAAAGCTAGATGAAAGTGAACGCTTGTACTGTGACAATTGCAATACATCCATATATGGATTTTACCGTAGCTGCCCCACCACCAGTTGCTCTTATGATCTCTGTCTCGTGTGCTGTCAAGAGCTCAGAGAGGGCCGCCAACCCGGAGGCATGGAGGCTGGAACATCTCATGAAAAATTTGAAGAGATTTTTCACCATCATGGTTCAACAAAAAAACAGAGTAAAATACATCGTAAAAGATATGACTGGGAGAGCGAACTTGCACCTACTAGTTTTCATTCTCAGGCTGACATGTTCTCTCCCTTCCCAGAATGGAAAGCTAATAGTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGTGGTACTGCACTGCTAGAACTGAGACGCATTTACAAAGCTAATTGGGTGGCAAAACTACTAAATAATGCTGAGGATCTCACTAGAAATTTCACGCCTCTGGATGTGGATATTACTGAAAAGTGTTCTTTCTGCCAGCTAAATTTGTTAGAAGGAAAAGTCAATCCTGGAGTCAGGAGGGCAGCATTCCGGGATGACAGTAAAGATAACTTCTTATATAGTCCAAACGCCCTTGACATTTCTGATGATGAGATCGAGCACTTCCAGAGGCACTGGATGAGGGGAGAACCTGTGGTTGTGAGAAATGTTTTGGCCAAAACATCTGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCTCTCAGAGAAACAGGTTCCAAAGCGAAGCTCAAAGAGGAAACACAAAGTGTTAAGGCTGTTGATTGTTTGGATTGGTGCGGGGTTGAAATTAATATACACCAATTTTTCCAAGGCTACGTAAAGGGTCGAATGCATAAAGATAAGTGGCCCGAAATGTTGAAGTTGAAAGATTGGCCTACATCCACCTCTTTTGAAGAGCGCTTGCCTAGGCATGGCGCTGAATTCCTTGCTGCACTTCCGTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCTAGTAAACTTCCTGCTGGCTCGTTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACAAAACTGCACTGCGATGTGTCTGATGCGGTGAATGTGCTGACACACACAAACAAGGTGAATATAGCTCCCTGGCAGAGAGAAAGCATACATAAATTGAAGAAGGAATATGATAAAGAAGACTATTTTGAACTTTATTGTGAAGCTTCAGCCAATGTTGATGGAAAATCTAAATCTAAAGCATTGAACCATGATCAAAAGGCAGAGAATGGAGTTAATAGGATTACACCAAGTAGCCAAGTAGATCCGTGCATTTCATCAATATCCGAAGACTTGTGTGGAAAGTTAGAAACACAGAACACAAAACAATGTGATGATAACGGAAAGGGCTCTTGCACCTACGGAAATGTTGCTGTAAGGAACTCCTCTGTGGAAGATAGTGTTAGTATAATATCATCTGCTGAAGTAGATTTTTCCAGGTTTTCCAAACTGGAACATGTTCAATCTGCAACCAGCTTAGCATCAAGTAATGCAAACATAAAGAAAGACAGAATGAGGATTGATAATGGAGCTGAGGCTGTCCTTGGTGGTGCTGTTTGGGACATCTTCCGCCGGCAAGATGTCCCAAAGTTAATTGAGTACTTAAGAAAGCACAAGAAGGAATTTCGTCATATCAACAATGAACCTGTTGATTCAGTTATACATCCTATTCATGATCAGACTCTATTCTTAAATGAGAGGCATAAGAAACAGCTAAAAAGAGAATTTAACGTTGAACCATGGACTTTCGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAATAGACAGTCTTGTATGAAGGTTGCGCTTGATTTTGTTTCTCCGGAAAATGTTGAAGAATGTTTACGACTAACTGAAGAGTTTCGTTTACTCCCAAAGTACCACAGGGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACCCTATATGCTGGAATAAGATTGAGTATAGAAGACCGATATGTTATTGTCCGGTAA 2859 0.4243 MDGARPKLAPKRIDVAGENHIPRLKNRINSEIEEAEQHKSNDKKRKIVTVTDLCNRSESELNGNSTKKKKKPIHQEKEGDFGKGLMDVYKVNKAKNGVEDTKKQEKEGGCGKVNKAKNGVKDIKQRGLSKKAKKGESLMCHQCQRNDKSGVVFCSSCNKKRYCYECIENWYPGKTREEFENVCPFCLGNCNCKACLREFPVLMDREVDASVKLQRLLYLLSKALPVLRHIHREQSLELETETKIRGKQLQEIDITRTKLDESERLYCDNCNTSIYGFYRSCPTTSCSYDLCLVCCQELREGRQPGGMEAGTSHEKFEEIFHHHGSTKKQSKIHRKRYDWESELAPTSFHSQADMFSPFPEWKANSDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNFTPLDVDITEKCSFCQLNLLEGKVNPGVRRAAFRDDSKDNFLYSPNALDISDDEIEHFQRHWMRGEPVVVRNVLAKTSGLSWEPMVMWRALRETGSKAKLKEETQSVKAVDCLDWCGVEINIHQFFQGYVKGRMHKDKWPEMLKLKDWPTSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRESIHKLKKEYDKEDYFELYCEASANVDGKSKSKALNHDQKAENGVNRITPSSQVDPCISSISEDLCGKLETQNTKQCDDNGKGSCTYGNVAVRNSSVEDSVSIISSAEVDFSRFSKLEHVQSATSLASSNANIKKDRMRIDNGAEAVLGGAVWDIFRRQDVPKLIEYLRKHKKEFRHINNEPVDSVIHPIHDQTLFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVEECLRLTEEFRLLPKYHRAKEDKLEVKKMTLYAGIRLSIEDRYVIVR* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4048 952 MobiDBLite consensus disorder prediction 55 79 - -
Mal3g4048 952 ProSiteProfiles Ig-like domain profile. 607 688 IPR007110 -
Mal3g4048 952 SMART cupin_9 566 916 IPR003347 -
Mal3g4048 952 ProSiteProfiles JmjC domain profile. 585 916 IPR003347 -
Mal3g4048 952 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 14 938 IPR045109 GO:0032454|GO:0033169
Mal3g4048 952 MobiDBLite consensus disorder prediction 62 79 - -
Mal3g4048 952 SUPERFAMILY Clavaminate synthase-like 463 934 - -
Mal3g4048 952 Coils Coil 21 45 - -
Mal3g4048 952 Gene3D Cupin 454 925 - -
Mal3g4048 952 Pfam JmjC domain, hydroxylase 801 899 IPR003347 -
Mal3g4048 952 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Mal3g4048 952 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN 14 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4048 Mal-Chr3 119119461 119130811 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mal3g4048 JmjC 4.8e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4048 K15601 - vvi:100258626 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4048 3 119119461 119130811 Mal3g4048 3 119119461 119130811 ECH