Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4034 ATGACAATTAAGCATACTATGAAATCTGGAATTCAGAACCTAAAGCGATGTAGTAAGCTAGAAGAAGAAGAAGAAGACAAAGACTACGTATCTCCACCACATATTCAGAAGAAGCAGAAACTCAATAACGGCTTTTACTCCGTCGGTAACAGTGAGATCCACTCCAATTCAGCTTCCACGGGTTTGAATATTGTAGCTCAAAATGCACCTCCGTTGTTGCGATCATCCAGAGGTCGCGTTAAAATGCTTCCATCCAAGTTTAAGGACTCAGTACTTCTCGATAACTCACGAATCAAAAGATCTAAGCTCGGGTTTCAAGATGATAATAGTGACATTGGAACGGGATTGGTGAATAAGGGAAAGGAGAATAAATGCGATTCAAAAACTCAGAGTGGCAACGGTTATGGTGAATTTGATTATGAGAAGCATGCTAAGTCGTTTAAGAGCATTAAAACGACGGTTAAAGGGAGTCGTTTGTTGTTGGTTAAAGCCGAAGGTGAAAATCGTTTTGATGAAAAGGGTAAAAAGGGGAAAGAGATTTTCAAACTACTTGATTTTCATTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGACTTTTCCGGCATGGCCTGCTGTGGTCATTGATCCCATTTTGCAAGCTCCTGAGTCTGTTCTCAAACGCTGTGTTCCCGATGCAATTTGTGTTATGTTTTTTGGTTATTCCAAAAATGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGGTGTTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCTGATCCGATTGTACAAGACCAAAGAAAGTGACTTTCACAAGGCAATGGAGGAGGCAATGTTGGCAGACAATGGCATTCTGGATCCACATTATAGAGCTGAGCAAATTGTGGAGGGTGCAGCTTCCTGTGCTGATCAGGAATATCACTGCCAAGGCCAGGATACAATATCTTGTTATGGCTGCGGTTTGACGTTGCCATGCAAAACCATGAAGAAGATTAAGGGTTCAAGCTGTGCTCCTCAACATTATTGTAAATCTTGTTCAAAGTTACTTAAATCAAAACAATATTGTGGCATTTGCAAAGAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATTTCCAGCAAACGTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTTGGATTGTAAGTTATCCACATCACAATCATACAAATCAAAAATCAAATCAGTACATAACAACCAAAAACCTGTGTTACCTGAAAATCTAGCGGTGGTGTGCAATGACTTGAAAGGAATTTACTTTCCAAAGCTTCATTTAGTTTTGTGCAAGTGTAGCTTGTGTGGGTCAAAAAAGCAGGCATTGGCTGAATGGGAACGACATGCAGGTTGTGCAGCGAAAAAATGGAAACATAGTGTGAAAGTAGAAGGCACAATGCAACCACTAATAAAATGGATCACGGAACACAATCCCCAAGCTGGAATTTCCATGAAATTAAATCAGAAACAGGTGTTTTCCTTTTTGCAAGAGAAATATGAACCAGTTTATGCAAAATGGACAACAGAGAGATGTGCGATTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATATGTAACAGATGCCAAGTTGCAGTTCACCAAGAGTGCTATGGTGCAAAGAATGTTCAAGATTTTACTTCCTGGGTTTGTAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCACTGAAGCCAACTGACGTTGAGTTGCTGTGGGTTCATGTAACATGCGCTTGGTTTCGCCCTGAAGTTGTTTTCCGAAACCATGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTCCTCCTAATTCCTTTTTGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGTGCATCAACAATGGGATATAGCATGGCATTGCGTTCTACAGTGAAGAAGGGGACTCAAATAACAAAGACGCTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTAGTAGTTGTGCATACACCTGTGGGGGTATTCTCTCCAAGAACTTCACTTCAAAATCACAAGGGATGCTTTAGGGGATCAAAGCTTATCACATCAAATAATATAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCGACTATCTGCTGCCAGGTGTCGTGTTTACAAAAAGTTTCCCAATAAGAAGGATGATGCACCAATAATTCACTTGCTTGGGGGGCCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAACAATACGGATGCCGGGGTATTTTCTTCATTTAAGGAACGCCTTCACCATTTACAGAAAACGGAAAATCGTAGAGTTTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGCCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTATCGTGGTGAACAGTTAAGGCGTAGTGTTGCTGATCTAAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGAAGTGGTAATTGATGCAACAAATAAGGGCAATATTGCACGTCTAATAAACCATTCATGCATGCCAAACTGCTTTGCAAGGATTATGTGTTTGGGAGATCAGGAGAGCAGAATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGTGAAGAATTAACGTATGATTACTTGTTCGATACAGATGAGCGGGATGAACTCAAGGTTCCCTGCCATTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 2919 0.4114 MTIKHTMKSGIQNLKRCSKLEEEEEDKDYVSPPHIQKKQKLNNGFYSVGNSEIHSNSASTGLNIVAQNAPPLLRSSRGRVKMLPSKFKDSVLLDNSRIKRSKLGFQDDNSDIGTGLVNKGKENKCDSKTQSGNGYGEFDYEKHAKSFKSIKTTVKGSRLLLVKAEGENRFDEKGKKGKEIFKLLDFHLGDIVWAKCGKTFPAWPAVVIDPILQAPESVLKRCVPDAICVMFFGYSKNGKQRDYAWAKQGMVFPFLEFMDRFQGLIRLYKTKESDFHKAMEEAMLADNGILDPHYRAEQIVEGAASCADQEYHCQGQDTISCYGCGLTLPCKTMKKIKGSSCAPQHYCKSCSKLLKSKQYCGICKEIWHHSDAGDWVCCDGCNVWVHAECDKISSKRFKDLENIDYYCPDCKGKLDCKLSTSQSYKSKIKSVHNNQKPVLPENLAVVCNDLKGIYFPKLHLVLCKCSLCGSKKQALAEWERHAGCAAKKWKHSVKVEGTMQPLIKWITEHNPQAGISMKLNQKQVFSFLQEKYEPVYAKWTTERCAICRWVEDWEDNKIIICNRCQVAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIPPNSFLKTCVICKQSHGSCTSCCKCATYFHVMCASTMGYSMALRSTVKKGTQITKTLIYCAVHRVPNPDSVVVVHTPVGVFSPRTSLQNHKGCFRGSKLITSNNIELLEPSTSEHYEVERLSAARCRVYKKFPNKKDDAPIIHLLGGPNLHSLSAITQLNNNTDAGVFSSFKERLHHLQKTENRRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATNKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKTNISAGEELTYDYLFDTDERDELKVPCHCKAPNCRKFMN* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4034 972 ProSiteProfiles SET domain profile. 830 947 IPR001214 GO:0005515
Mal3g4034 972 ProSiteProfiles Zinc finger PHD-type profile. 541 592 IPR019787 -
Mal3g4034 972 CDD PHD_ATX3_4_5_like 543 589 IPR042011 -
Mal3g4034 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 538 592 IPR013083 -
Mal3g4034 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 711 IPR013083 -
Mal3g4034 972 Pfam PHD-zinc-finger like domain 597 709 - -
Mal3g4034 972 ProSiteProfiles Extended PHD (ePHD) domain profile. 595 710 IPR034732 -
Mal3g4034 972 ProSiteProfiles Zinc finger PHD-type profile. 357 413 IPR019787 -
Mal3g4034 972 SMART PWWP_4 186 255 IPR000313 -
Mal3g4034 972 ProSiteProfiles PWWP domain profile. 188 257 IPR000313 -
Mal3g4034 972 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 972 - -
Mal3g4034 972 SMART PHD_3 543 590 IPR001965 -
Mal3g4034 972 SMART PHD_3 654 710 IPR001965 -
Mal3g4034 972 SMART PHD_3 359 411 IPR001965 -
Mal3g4034 972 SUPERFAMILY FYVE/PHD zinc finger 357 418 IPR011011 -
Mal3g4034 972 ProSiteProfiles Post-SET domain profile. 956 972 IPR003616 -
Mal3g4034 972 ProSitePatterns Zinc finger PHD-type signature. 544 589 IPR019786 -
Mal3g4034 972 Pfam SET domain 841 946 IPR001214 GO:0005515
Mal3g4034 972 SMART PostSET_3 956 972 IPR003616 -
Mal3g4034 972 SMART set_7 830 953 IPR001214 GO:0005515
Mal3g4034 972 Gene3D - 183 289 - -
Mal3g4034 972 PANTHER PHD FINGER PROTEINS 1 972 - -
Mal3g4034 972 CDD SET_SETD1-like 819 968 - -
Mal3g4034 972 Gene3D SET domain 769 972 IPR046341 -
Mal3g4034 972 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 972 IPR025780 -
Mal3g4034 972 SUPERFAMILY SET domain 824 969 IPR046341 -
Mal3g4034 972 SUPERFAMILY FYVE/PHD zinc finger 542 606 IPR011011 -
Mal3g4034 972 SUPERFAMILY Tudor/PWWP/MBT 184 285 - -
Mal3g4034 972 Pfam PHD-finger 359 412 IPR019787 -
Mal3g4034 972 CDD PHD_TCF19_like 360 410 - -
Mal3g4034 972 Pfam PHD-finger 556 590 - -
Mal3g4034 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 415 IPR013083 -
Mal3g4034 972 Pfam PWWP domain 189 283 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4034 Mal-Chr3 118979114 118988499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4034 544 696 C2H2 Transcription Factor Family AT3G14740 34.568 2.32e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal3g4034 zf-HC5HC2H_2 1.7e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4034 - - lja:Lj1g3v5034780.1 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4034 3 118979114 118988499 Mal3g4034 3 118979114 118988499 ECH