Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4033 ATGGACATCTTGAAGTTCCTCTTTCACTTGTTCATATTATTTCCTGTCATATATACCTCAGAAGACTATTGTCAAAATTCTTGGTGCAGTGAAAATAACATCCTTATTCGTTTCCCCTTTCAAATAGAAGTTGAAGGTGATCAACATCCTTACTGTGGCTATCCTGGTTTTAAACTAACTTGTACTAGTGATAGCAAAACAGTTCTAACACTTCCTTATTCAGGAGTGTTCTATGTTCGCAAAATCGACTATCTCGAACACCACATACAAGTCTATGACCCTCATCGCTGCCTTCCAAATCGTCTTCTAAGTCTCAACCTTTCAGGTTCACCTTTCGTTACCGAATTTCTTACTAACTACACTCTCTTAAGCTGCTCAACTCCGGACATATTAGGATCACAATTCATACCTGTTGACTGTCTTAGCAATTCTACACATTTTGTATCAGCTATTCCTTCAGTGAGCTTCACCAATTCACTGCCTCAGTCTTGCTACGTTATTAGAAACCTCTCAGTTCCAGTTGCAAGTTCATATCCGGAATTTTTCTTAGACAACTTAAGTGAAGATCTTGAACTAACATGGTCTTCACCGGATTGTAGATATTGCGAATTACAAGATCGCTTGTGCGGATTTGAGAGCAGAAACAACAATCAAGTTCGTTGTTTCTCTAATCAGCAAACGGAAGTCAGAATTTTTCCATCTTCAAGCCATTCACAACATAGCCTTTTGATTTCTAGAATCATAATATTATCAATTGGGGGAACAGCTATGATGTGTGCAATTGGGATAGGATGCGTAACGTGCTTCAAGCGTAGAAGAAGGACGATATCAGCTGAACCTTCCATTGACATTACCATTGCAAGGATGAGGATGGGTCTCGATGAGTCAACAATTGAGTCTTTTGAGAAGGTTGTGTTAGGAGAGAGCCGAAGGCTGCCAGGAGTGGGACACAATGATGGAACTGGATGTTGCCCAATATGCCTCTCAGAGTACAACAACAAGGACATAATCAGATGCATTCCTGAATGCAAACACTGTTTCCATGCTCACTGCATTGATGAATGGCTTCGCATGAACGCTACATGCCCAATTTGCCGCAACTCTCCCTCCCTTTCTCACTCTGTTCTTCGTATTTCATCATGA 1143 0.4068 MDILKFLFHLFILFPVIYTSEDYCQNSWCSENNILIRFPFQIEVEGDQHPYCGYPGFKLTCTSDSKTVLTLPYSGVFYVRKIDYLEHHIQVYDPHRCLPNRLLSLNLSGSPFVTEFLTNYTLLSCSTPDILGSQFIPVDCLSNSTHFVSAIPSVSFTNSLPQSCYVIRNLSVPVASSYPEFFLDNLSEDLELTWSSPDCRYCELQDRLCGFESRNNNQVRCFSNQQTEVRIFPSSSHSQHSLLISRIIILSIGGTAMMCAIGIGCVTCFKRRRRTISAEPSIDITIARMRMGLDESTIESFEKVVLGESRRLPGVGHNDGTGCCPICLSEYNNKDIIRCIPECKHCFHAHCIDEWLRMNATCPICRNSPSLSHSVLRISS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4033 380 CDD RING-H2_EL5_like 324 366 - -
Mal3g4033 380 Pfam Ring finger domain 324 366 IPR001841 -
Mal3g4033 380 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 375 - -
Mal3g4033 380 ProSiteProfiles Zinc finger RING-type profile. 324 366 IPR001841 -
Mal3g4033 380 Pfam Wall-associated receptor kinase C-terminal 177 225 IPR032872 -
Mal3g4033 380 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 3 375 - -
Mal3g4033 380 Pfam Wall-associated receptor kinase galacturonan-binding 24 93 IPR025287 GO:0030247
Mal3g4033 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 370 IPR013083 -
Mal3g4033 380 SUPERFAMILY RING/U-box 323 369 - -
Mal3g4033 380 SMART ring_2 324 365 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4033 Mal-Chr3 118976269 118977853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4033 24 370 C3H Transcription Factor Family AT2G46495 39.031 2.63e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4033 - - gmx:100799895 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4033 3 118976269 118977853 Mal3g4033 3 118976269 118977853 ECH
Mal3g4033 3 118976269 118977853 Mal2g1807 2 21695390 21697528 PCT