Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4030 ATGAATGCAAAGGGACATAAATTTGTGAGGTTTGAGGATTGGAGATCAGAGTCATCTTTTAGTATAGAGCAGGAAGAGACTGTAAACAAAAGAAAAGAGAGACCAAGTGTAAGTGCTGTTTTGAAGAGTATTGGAAGAAGACTTGGGAGTGGATCAGAGAAGATGAAGAAATTCAGAAGAGCTTCTTCAGCAGTTCACCCTGTAAGTGAAGGACAGACAAAGAAATTGGATTCTTCTAAGCGTGAAATTCTTGATCCACAGGGACCTATGCTTCAGAAATGGAACAAAATCTTTGTAATCACGTGTGTGCTGGCAGTTTCTGTGGACCCTCTTTTCTTTTACATTCCTGTGATCGTCGGTAAAAATAAATGTCTTGATTTGGATGGAACATTGCAGACTACTGTCAGTGTTCTTCGCACGTTCTTCGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTAGAACTGGGTTTATTGCACCTTCTTCTCGTGTTTTTGGAAGAGGCGAGCTCGTTGAGGATCCTGTCGCCATAATGAAAAGATACTTGAGTTCTCATTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGGTTATTGTTTTGGCTATAATTCCAAACTTGAAAAGCACGGGTCCATTTTTAGCAAAGGATTTGTTGAAGTATACAGTATTAATCCAGTATGTGCCGAGACTACTGCGGATTCGTCCACTATTTAAAGAAGTAACTAGAACTTCAGGCATATTGACAGAGACAGCGTGGGCTGGTGCTGTTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTCGTTGGAGCTAACTGGTATCTGCTTTCGGTAGAATCACAGGTGCGGTGTTGGCGCAGAGTAATGAACAATGCTTCGATCTTTCATGAATCATATTTGGGCTGTGGACTGCGAAATACAACAGTCCTTTCACTTCTCAATAGTAATTGTATTTTGGTTGACCCTGATGAAATCAAGGACACAAAGACCTTCAATTTTGGAATATTTTACGATGCTTTACAATCACTTGTGGTAGATTCAACCACTGATTTTCCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACTTATGTCACGGAGATAGCCTTTGCGATTTTCATTGCCATTTTTGGATTGGTTTTATTCTCATTACTTATTGGAAACATGCAGAAATATTTGGAATCTACAACTGTTAGGGTGGAAGAGATGAGAGTGAAGAGGAGGGATGCAGAACGATGGATGTCCCACCGTATGTTACCTGATAACTTGAAGCAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAAGAGACTTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGCGTCATCTTTGTTTAGCTTTAGTTAAAAAAGTGCCAATGTTTGAGAAAATGGATGAGCAATTGTTGGATGCAATATGTGATAGGCTGAAGCCAGTTCTATATACAGAGAAGAGTTGCATTGTTCGCGAAGAAGATCCGGTAAATGAGATGCTTTTCATTATGCGTGGAAAAGTCGCTACCATGACAACAAATGGTGGCAGAACTGGTTTCTTCAACTCCTTACTTCTAATGCCTGGTGATTTTTGTGGAGAGGAGCTTTTAACATGGGCTTTGGATCCAAACTCCTCCTCAAATCTACCAACTTCAACTAGAACAGTAGAAACTATATCAGAAGTTGAAGCATTTGCACTCATGGCTGATGACTTGAAATTTGTTGCTTCCCAATTTAGACGTCTTATCAACAGCAAACAACTCCAACACACTTTCAGGTCATATTCGCCGCAATGGAAGACATGGGGTGCGTGTTTCATACAAGCAGCTTGGCGTCGATATTGTAAAAAGAAGATTGAGAGGACATTGCGTGAAGCAGAAGACAAGCTACAAGATGCTTTGGCAAATGAGGAAGGGTCAACTATAAGCCTTGGTGCAACAATATATGCATCAAGGTTTGCTGCAAATGCATTAAAAAACTTGAGAGAAAATAACAGACAAAACAGAATGCCGCAGAGACTACTACCTCTTTTGCCTCCAAAGCCAGCTGAGCCTGATTTCACTGCTCAAAAACACTAG 2157 0.3996 MNAKGHKFVRFEDWRSESSFSIEQEETVNKRKERPSVSAVLKSIGRRLGSGSEKMKKFRRASSAVHPVSEGQTKKLDSSKREILDPQGPMLQKWNKIFVITCVLAVSVDPLFFYIPVIVGKNKCLDLDGTLQTTVSVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVEDPVAIMKRYLSSHFIIDILSIIPLPQVIVLAIIPNLKSTGPFLAKDLLKYTVLIQYVPRLLRIRPLFKEVTRTSGILTETAWAGAVYNLFLYMLASHVVGANWYLLSVESQVRCWRRVMNNASIFHESYLGCGLRNTTVLSLLNSNCILVDPDEIKDTKTFNFGIFYDALQSLVVDSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVTEIAFAIFIAIFGLVLFSLLIGNMQKYLESTTVRVEEMRVKRRDAERWMSHRMLPDNLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLALVKKVPMFEKMDEQLLDAICDRLKPVLYTEKSCIVREEDPVNEMLFIMRGKVATMTTNGGRTGFFNSLLLMPGDFCGEELLTWALDPNSSSNLPTSTRTVETISEVEAFALMADDLKFVASQFRRLINSKQLQHTFRSYSPQWKTWGACFIQAAWRRYCKKKIERTLREAEDKLQDALANEEGSTISLGATIYASRFAANALKNLRENNRQNRMPQRLLPLLPPKPAEPDFTAQKH* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4030 718 SUPERFAMILY cAMP-binding domain-like 418 606 IPR018490 -
Mal3g4030 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 716 - -
Mal3g4030 718 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Mal3g4030 718 Gene3D Helix hairpin bin 416 480 - -
Mal3g4030 718 SMART cnmp_10 489 620 IPR000595 -
Mal3g4030 718 Gene3D Jelly Rolls 487 607 IPR014710 -
Mal3g4030 718 CDD CAP_ED 489 609 IPR000595 -
Mal3g4030 718 Coils Coil 642 662 - -
Mal3g4030 718 Gene3D - 97 412 - -
Mal3g4030 718 SUPERFAMILY Voltage-gated potassium channels 85 411 - -
Mal3g4030 718 MobiDBLite consensus disorder prediction 690 718 - -
Mal3g4030 718 Pfam Ion transport protein 94 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mal3g4030 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4030 Mal-Chr3 118948087 118951782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4030 1 715 Ion Channels AT5G53130 64.039 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4030 K05391 - gmx:100797784 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4030 3 118948087 118951782 Mal3g4030 3 118948087 118951782 ECH
Mal3g4030 3 118948087 118951782 Mal2g1815 2 21768253 21775326 PCT