Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4009 ATGTCAATGAAGAGACAAAGAAGCAATGAAGGAACAGAGAGCGTAGATTTTGCAAATTGTTTGATGCTACTTTCTTGTCCACAACAAAAAACCTTTGAACATGGGGAATATGAATGCAAAACATGCAACAAAAAATTCTCATCTTTTCAAGCCCTTGGTGGCCATAGGGCTAGCCACAAGAGAATGAAACTAGCTGAAGGTGAAGAACTGAAAGAACAAGCTAAATCTCTTAGTTTGTGGAATAAACCAAAAATGCATGAGTGTTCGATTTGTGGAATGGGATTCTCTTTGGGTCAAGCATTGGGAGGCCACATGAGAAAACATAGAGCTGTTATAAATGAAGGGGTTTCTTCTATCAATCAAATTATTGCAAAAATTCCAGTTTTGAAGAGAATGAATAGTAAGAGGATTATGGGATTGGACTTGAATTTGACACCTCTAGAGAATGATGACTTGATGTTTGGAATGAAGTCACCTCCAACACCAATTCCACTTTCTTTGTTCTGA 507 0.3748 MSMKRQRSNEGTESVDFANCLMLLSCPQQKTFEHGEYECKTCNKKFSSFQALGGHRASHKRMKLAEGEELKEQAKSLSLWNKPKMHECSICGMGFSLGQALGGHMRKHRAVINEGVSSINQIIAKIPVLKRMNSKRIMGLDLNLTPLENDDLMFGMKSPPTPIPLSLF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4009 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Mal3g4009 168 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mal3g4009 168 SMART c2h2final6 37 59 IPR013087 -
Mal3g4009 168 SMART c2h2final6 86 108 IPR013087 -
Mal3g4009 168 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Mal3g4009 168 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 157 - -
Mal3g4009 168 PANTHER ZINC FINGER PROTEIN ZAT5 3 157 - -
Mal3g4009 168 Gene3D Classic Zinc Finger 34 108 - -
Mal3g4009 168 Pfam C2H2-type zinc finger 37 60 - -
Mal3g4009 168 Pfam C2H2-type zinc finger 86 110 - -
Mal3g4009 168 SUPERFAMILY beta-beta-alpha zinc fingers 37 108 IPR036236 -
Mal3g4009 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4009 Mal-Chr3 118602219 118602725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4009 3 160 C2H2 Transcription Factor Family AT2G37430 48.555 5.74e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g4009 zf-C2H2_6 9.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4009 - - aprc:113870747 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4009 3 118602219 118602725 Mal1g2939 1 42487360 42487860 PCT