Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4008 ATGAAAAGACAAAGGGATGTGGAAGGGTTAGAAAGCATAGATTTAGCAAATTGTCTAATGATGTTATCTTATCCCCAACATCAACAACAAAACAATAAACCAAATCAAAAAAGTTTTGGACCAGTGGAATATGAGTGCAAAACGTGCAACAAAAAATTCTCATCTTTTCAAGCACTAGGTGGCCATAGGGCTAGCCATAAAAGATCAAAACTAGAAGGAGATGAATTCATAACAAATTCTACATCTTTGAGCTTAGGAAATAAACCCAAAATGCACGAATGTTCAATTTGTGGGCAAAATTTTTCATTGGGACAAGCATTGGGTGGACACATGAGAAGGCATAAAGCTATTATCAACGAAGAGGTTTCTTTAATGGAAAAAGCTGTTGTGAAATTACCAGTTTTAAAGAGATTGAATAGTGCAAGGGCTATGTGCTTAGACTTGAACTTGACACCGTTGGAGAATGATTTGAAGTTATTGTTTGGAAAGATGGCTCCCAATCTTGATGTTTTAGTATGA 519 0.3565 MKRQRDVEGLESIDLANCLMMLSYPQHQQQNNKPNQKSFGPVEYECKTCNKKFSSFQALGGHRASHKRSKLEGDEFITNSTSLSLGNKPKMHECSICGQNFSLGQALGGHMRRHKAIINEEVSLMEKAVVKLPVLKRLNSARAMCLDLNLTPLENDLKLLFGKMAPNLDVLV* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4008 172 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
Mal3g4008 172 Gene3D Classic Zinc Finger 43 69 - -
Mal3g4008 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Mal3g4008 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Mal3g4008 172 PANTHER ZINC FINGER PROTEIN ZAT5 12 168 - -
Mal3g4008 172 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 168 - -
Mal3g4008 172 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Mal3g4008 172 SMART c2h2final6 92 114 IPR013087 -
Mal3g4008 172 SMART c2h2final6 44 66 IPR013087 -
Mal3g4008 172 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Mal3g4008 172 Gene3D Classic Zinc Finger 73 138 - -
Mal3g4008 172 Pfam C2H2-type zinc finger 44 68 - -
Mal3g4008 172 Pfam C2H2-type zinc finger 92 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4008 Mal-Chr3 118596766 118597284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4008 1 170 C2H2 Transcription Factor Family AT2G37430 48.295 2.95e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal3g4008 zf-C2H2_6 9.3e-09 CL0361