Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3978 ATGAACCACTGCGTTCCAGATTTCGAATTTCAAATGGATGGACAAGGTTTACCTCGCGCTAAGAAACCTATCATTGCAGACGATGAGATCATGGAGCTGTTATGGCAAAACGGACAAGTCGTGACACAGAGGCCAAACCACCGTCTTGCGAAGAAACCACCGCCTGGTAAAAGCTCCGACGATTCCACTCGCGGCGGAGGAACTTCATCGGCGAGGGAGATTCTACCGGAAGTAGAAAATTACAATCAATATCTCTTTATGCAAGAAAACGAAATGGCTTCATGGCTTGATTCTCCTTTCGATCAAACATTATCCGCCGATTTCCTTAACCAGCCGCCGCCGGCGACGGTTAATAACAACAGTACCATGCAAACTCCTCACCGTACGTCTCAGTTGACGGAACTTCGGCATACTCCAATATCAGCGGCGCCTTCTCGTCCTCCGATTCCGCCGCAACGGAGGTCCGAGCAACTGCCGCCGAATTTCGCGTACTTTGCGAGGCACAATGTTAGAATTGAGCCAGGACCGTCGGCGAGGGAATCAACTGTGGTAGATTCGTGTGAGACGCCAGCTGTAATGCCGTCGGCGGTTTCGGAGACGGCAAGAAGCTTGGCGGATCAAACGGAAGGAGAAACCGGAGTAGCGGCGGTTTCGACGACTTTTGATGAACCTGGCGGTTCGAGTAGCAGTGGAGAACCTGAACCGGTTCGGAAGTTAGCGGAGCAGGACCGGAAGAGGAAGGGAATTGAAGCGGAGGAATGGGAATATCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGCCAAAAAAAGTGCCAGTGGATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCTGACAAAGCTTCTATGCTGGATGAAGCAATTGAATACTTGAAGTCACTACAGTTACAAGTGCAGAGAGTACAACTTATGCAGATGATATCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAATTGGGATGGGGATGGGGATGGAAATAGGAATAAACAGACCAGTAATGCCATTTCCCAATATGTTACCTGGTTCTGCTTTGCCTGCAGCTGCAAATTTGGGACCAAGGTTCGCCGCCATGCCTCCTTTTCACATGCCGCATGTCCCTACACCTGATTTATCTAGAATGCAAGCAGCAAATCAGGTAGATAATAATGTGATCACCTCAGTTGGAACACATGACTCAAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAACAATACCTTGGACCCCACCAGATGCAGTTTCAATTAATGCAGAATCAAGCAATGAACCAACCAAATGTCACCAAGCCAAGTATCAGCAGGCCCCTTGAACATCTAGAAACCCGCCAGTCAGGAGATAAATGA 1485 0.4801 MNHCVPDFEFQMDGQGLPRAKKPIIADDEIMELLWQNGQVVTQRPNHRLAKKPPPGKSSDDSTRGGGTSSAREILPEVENYNQYLFMQENEMASWLDSPFDQTLSADFLNQPPPATVNNNSTMQTPHRTSQLTELRHTPISAAPSRPPIPPQRRSEQLPPNFAYFARHNVRIEPGPSARESTVVDSCETPAVMPSAVSETARSLADQTEGETGVAAVSTTFDEPGGSSSSGEPEPVRKLAEQDRKRKGIEAEEWEYQSEDVDFESAEAKKSASGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIEYLKSLQLQVQRVQLMQMISMGCGMVPMMFPGIQQYMPTIGMGMGMEIGINRPVMPFPNMLPGSALPAAANLGPRFAAMPPFHMPHVPTPDLSRMQAANQVDNNVITSVGTHDSNQSRIPNFTDPYQQYLGPHQMQFQLMQNQAMNQPNVTKPSISRPLEHLETRQSGDK* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3978 494 CDD bHLH_AtPIF_like 281 350 - -
Mal3g3978 494 MobiDBLite consensus disorder prediction 472 494 - -
Mal3g3978 494 Pfam Helix-loop-helix DNA-binding domain 285 331 IPR011598 GO:0046983
Mal3g3978 494 MobiDBLite consensus disorder prediction 236 254 - -
Mal3g3978 494 MobiDBLite consensus disorder prediction 194 213 - -
Mal3g3978 494 Coils Coil 287 307 - -
Mal3g3978 494 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 492 - -
Mal3g3978 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Mal3g3978 494 MobiDBLite consensus disorder prediction 218 290 - -
Mal3g3978 494 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 492 IPR031066 -
Mal3g3978 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 339 IPR036638 GO:0046983
Mal3g3978 494 SMART finulus 287 336 IPR011598 GO:0046983
Mal3g3978 494 MobiDBLite consensus disorder prediction 41 74 - -
Mal3g3978 494 Gene3D - 276 341 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3978 Mal-Chr3 118195422 118200051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3978 1 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.379 2.83e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal3g3978 HLH 2.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3978 - - gmx:100797225 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3978 3 118195422 118200051 Mal3g3978 3 118195422 118200051 ECH