Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3955 ATGGCATCATCAACTCAAGGTCAAGTCATTACATGCAAAGCTGCGGTGGCCTGGGAACCCAACAAACCTTTAACGATCGAAGACGTTGAGGTCGCTCCGCCGCAAGCCAACGAAGTTCGAATCCAAATCCTCTTCACCGCTCTCTGTCACACCGATGCTTATACTTGGAGTGGCAAAGATCCTGAAGGCCTTTTCCCTTGCATTCTCGGTCACGAAGCTGCTGGGGTTGTTGAAAGTGTTGGAGAAGGTGTGACTGATGTGAAGCCTGGGGATCATGTGATTCCGTGTTACCAGGCTGAGTGTGGAGAATGTAAGTTTTGCAAATCTGGCAAGACAAATCTCTGTGGCAAGGTTCGTGCTGCTACTGGTGTTGGGGTTATGATGAATGATCGCAAGCCTCGGTTTTCTATTAAGGGAAAACCCATTTATCATTTTATGGGAACTTCTACTTTTAGTCAGTACACTGTTGTTCATGATGTTAGTGTTGCTAAGATTCATCCAGATGCTCCTTTGGAAAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGCCTCGGAGCTGTCTGGAACACTGCAAAAGTTGAGCCAGGGTCCATTGTTGCTATTTTCGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAATCTGCTGGCGCATCACGGATTATTGGAATAGATATTGATAGCAACAAGTTTGATACAGCAAAAAAATTTGGAGTCACTGAGTTCATTAATCCAAAAGACCATGAGAAACCAATTCAGCAGGTTATAAGTGATCTAACAGATGGAGGAGTCGATTATAGCTTTGAGTGCATTGGAAATGTCTCTGTGATGAGATCTGCTTTGGAATGCTGCCACAAGGGATGGGGGACATCAGTTGTTGTGGGCGTTGCAGCGTCAGGGCAGGAAATATCAACTCGCCCTTTCCAGTTGGTGACTGGGCGTGTATGGAAAGGAACAGCTTTTGGTGGCTTTAAGAGCAGGTCACAAGTGCCTTGGCTTGTTGAAAAGTATTTGAAGAAGGAAATCAAGGTTGATGAGTATATTACCCATAATTTGACTCTTGCTGAGATCAACAAGGCTTTCGATCTTATGCATGAAGGGAAATGTCTTCGTTGTGTGCTTGCATTGCATTGA 1143 0.4523 MASSTQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGVVESVGEGVTDVKPGDHVIPCYQAECGECKFCKSGKTNLCGKVRAATGVGVMMNDRKPRFSIKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKFDTAKKFGVTEFINPKDHEKPIQQVISDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVVVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLAEINKAFDLMHEGKCLRCVLALH* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3955 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Mal3g3955 380 CDD alcohol_DH_class_III 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Mal3g3955 380 PANTHER ALCOHOL DEHYDROGENASE 5 378 - -
Mal3g3955 380 Pfam Zinc-binding dehydrogenase 208 330 IPR013149 -
Mal3g3955 380 Gene3D - 184 322 - -
Mal3g3955 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
Mal3g3955 380 Gene3D - 15 374 - -
Mal3g3955 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Mal3g3955 380 SUPERFAMILY GroES-like 5 199 IPR011032 -
Mal3g3955 380 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 5 378 - -
Mal3g3955 380 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 12 378 IPR014183 GO:0006069|GO:0008270|GO:0051903
Mal3g3955 380 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3955 Mal-Chr3 117786978 117790233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3955 3 333 Monolignol Biosynthesis Gene Families AT1G72680 26.190 5.83e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3955 K00121 - mnt:21398977 714.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3955 3 117786978 117790233 Mal3g3955 3 117786978 117790233 ECH
Mal3g3955 3 117786978 117790233 Mal1g2575 1 35594360 35597656 PCT