Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3943 ATGGCACGTGTATTTCCACTTCAAGATCCCAGAGTCCCGCATGGATTAAAAGTACTGATTGTGGAAGCTGATGACCTCGTCCGAAAGGCTCATGAAGATATGTTGATATCACTTGGTGTGGAAACTCACACAGTCAAAAATGGCAAAGAAGCCTTAGACCTCATTGGCACGGTTGAACGTAAATTCGACCTCATTCTCATGGCTAGGATCATGCCTGTCATGGATGGAATTACGGCGACGAAGAAGCTGCGTCATTTAGATTACCCTGCCCAGATTATTGGTGTGTCACGTCGCCTTACAAATGACGAATATGAAGAATTTAAAGAAGCGGGGCTAGATGATCTACATCATGATGGGATACCCTTGCCCCATCATATAATGAAACTAATTTTAAAAAGGGTTCTCCCTGTCAAACCCTGTAATGGACACTGA 432 0.4375 MARVFPLQDPRVPHGLKVLIVEADDLVRKAHEDMLISLGVETHTVKNGKEALDLIGTVERKFDLILMARIMPVMDGITATKKLRHLDYPAQIIGVSRRLTNDEYEEFKEAGLDDLHHDGIPLPHHIMKLILKRVLPVKPCNGH* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3943 143 Pfam Response regulator receiver domain 18 114 IPR001789 GO:0000160
Mal3g3943 143 SMART REC_2 16 134 IPR001789 GO:0000160
Mal3g3943 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 14 131 - -
Mal3g3943 143 CDD REC_hyHK_CKI1_RcsC-like 18 114 - -
Mal3g3943 143 Gene3D - 3 120 - -
Mal3g3943 143 ProSiteProfiles Response regulatory domain profile. 17 133 IPR001789 GO:0000160
Mal3g3943 143 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 131 - -
Mal3g3943 143 SUPERFAMILY CheY-like 14 115 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3943 Mal-Chr3 117678581 117679230 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3943 16 113 Response Regulator Gene Family AT3G04280 42.424 8.06e-17 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal3g3943 Response_reg 1.5e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3943 - - mtr:MTR_7g098860 149.443