Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3933 ATGGCTATGAAAGAGATTGAAGACAGAGCGTTGAAATTCGGAATCGAGCTCGATTCCATTCAACTCCCAGAAGGTGAAAACTGTGGCATCTTCAGCGATGATGAAGATGTTTTTCAAGAGGAGAATCAGAAATTCGATAACATAATAGTAGTTGATAATCTTCCCCTTGTTGCGGAGGATGATAATAGGTTTCAGAACCTTAATGGTGTTGTATCTAAAATTTTTCGTCAGATTAGTCCTGTTAATGTCTTATGGATACCCGTTAATCCCACGACTCGAATGTCATTAGGTTACTGCTTCATTGAGTACGATACTCAGGAAGTTGCCCAGATTGCTAAAGAGAGGATTCATGGATACAAATTGGGTCCATACACATTGGCCGTCAATTTGTTTGATGATTTTGACCGGTTTATGGATGTGCCGGACCACTGGACTCTTCCTCCAGCGCAAGAGGTTGAACTAAGCCAACAGCGCCATGCTGCCGATCTCATTGAGAAGGAGAGGCTTAGTCGAATGATGAGCAATAAGGAGATATTTCAAAAGAGAGTTGTCAGTCACCGCCAAGAGGAATTCATTAACAGACTTAGCAGAGAAAGGGAGGAGGCTCAGACGGAATTAATGAGAATGTTGAAATATTCTTCTAAGGTGGAAGAGGAGAGAATACAAAAATTGCGTCATGAGGAAGAAGCTCGGGAGCGTCAAGACCGTGGTTTGATGCAGCAAGAGATTGAACTAAGCCAACAGCGCCATGCTGCAGATCTCATTGAGAAGGAGAGGCTTAGTCGAATGATGAGCAATAAGGAGATATTTCAAAAGAGAGTTGTCAGTCACCGCCAAGAGGAATTCAATAACAGACTTAGCAGAGAAAGGGAGGAGCCTGAGACGGAATTAATGAGAAAGTTGAAATATTATTCTAAGGTGGAAGAGGAGAGAAGACAAAAATTGCGTCAGGAGGAAGAAGCTCGGGAGCATCAAGAGGCTGAGACGAAAAAGAAGGAACAGGCTGAACACCAAGCAAAATTGGATGTGATAGCTGAGAAGCAGATGCAAAGGCCAAGAGAAATTGAAGATGTGATGGTAACGAAAGAGATTGAAGACAGAGCGTTGAAATTCGGAATCGAGCTCGATTCCATTCACCTCCCACAAGGTGAAAACTGTGGCATCTTCAGCGATGGTAAAGATGAAGATGCTTTTCAAGAGGAGAATCAGAAATTTGATTATGGCTTTGGAAACATTGTAGTAGTTGATAATCTTCCCCTTGTTGCGGAGGATGATATTAGGTTTCAGAACCTTAATGGCGTTGTATCTAAAATTTTTCGTCAGATTAATCCTGTTAATGTCTTCTGGATGCCCGTTAATCCCACTACTCGAATGTCATTAGGTTACTGCTTCATTGAGTACGATACTCAGGAAGTTGCCCAGATTGCTAAGGAGAGGACTCATGGATCCAAATTGGGTCCATACACATTTGCCGTCAATTTGTTTGATGATTTTGACCGGTTTATGGATGTGCCGGACCACTGGACTCCTCCTCCAAATGCTCCTGCGGAAGAGGTTGAACTAAGCCAACAGCGCCATGCTGCAGATCTCATTGAGAAGGAGAGGCTTAGTCGAATAATGAGCAATAAGGAGATATTTCAAAAGAGAGTTGTCAGTCACCGCCAAGAGGAATTCAATAACAGGCTTAGCAGAGAAAGGGAGGAGCCTGAGACGGAATTAATGAGAAAGTTGAAGTATTATTTTAAGGTGGAAGAGGAGAGAAGACAAAAATTGCGTCAGGAGGAAGAAGCTCGGGAGGGTCAAGAGGCCGAGAGAAAAAAGAAGGAACAGGCTGAAATGCAGAGCCAAAGGCTAAGAGAAATTGTAGAAATGGCTGGAATGGAGAGGAGGAGGGGTCTTGCCTGA 1905 0.432 MAMKEIEDRALKFGIELDSIQLPEGENCGIFSDDEDVFQEENQKFDNIIVVDNLPLVAEDDNRFQNLNGVVSKIFRQISPVNVLWIPVNPTTRMSLGYCFIEYDTQEVAQIAKERIHGYKLGPYTLAVNLFDDFDRFMDVPDHWTLPPAQEVELSQQRHAADLIEKERLSRMMSNKEIFQKRVVSHRQEEFINRLSREREEAQTELMRMLKYSSKVEEERIQKLRHEEEARERQDRGLMQQEIELSQQRHAADLIEKERLSRMMSNKEIFQKRVVSHRQEEFNNRLSREREEPETELMRKLKYYSKVEEERRQKLRQEEEAREHQEAETKKKEQAEHQAKLDVIAEKQMQRPREIEDVMVTKEIEDRALKFGIELDSIHLPQGENCGIFSDGKDEDAFQEENQKFDYGFGNIVVVDNLPLVAEDDIRFQNLNGVVSKIFRQINPVNVFWMPVNPTTRMSLGYCFIEYDTQEVAQIAKERTHGSKLGPYTFAVNLFDDFDRFMDVPDHWTPPPNAPAEEVELSQQRHAADLIEKERLSRIMSNKEIFQKRVVSHRQEEFNNRLSREREEPETELMRKLKYYFKVEEERRQKLRQEEEAREGQEAERKKKEQAEMQSQRLREIVEMAGMERRRGLA* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3933 634 Coils Coil 185 212 - -
Mal3g3933 634 Coils Coil 238 258 - -
Mal3g3933 634 MobiDBLite consensus disorder prediction 315 337 - -
Mal3g3933 634 SMART rrm1_1 48 129 IPR000504 GO:0003723
Mal3g3933 634 SMART rrm1_1 412 493 IPR000504 GO:0003723
Mal3g3933 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 411 497 IPR000504 GO:0003723
Mal3g3933 634 PANTHER BNACNNG51870D PROTEIN 1 150 - -
Mal3g3933 634 Coils Coil 304 338 - -
Mal3g3933 634 SUPERFAMILY RNA-binding domain, RBD 410 500 IPR035979 GO:0003676
Mal3g3933 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 133 IPR000504 GO:0003723
Mal3g3933 634 Coils Coil 583 621 - -
Mal3g3933 634 SUPERFAMILY RNA-binding domain, RBD 44 135 IPR035979 GO:0003676
Mal3g3933 634 Coils Coil 216 236 - -
Mal3g3933 634 MobiDBLite consensus disorder prediction 590 619 - -
Mal3g3933 634 PANTHER BNACNNG51870D PROTEIN 359 547 - -
Mal3g3933 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 123 IPR000504 GO:0003723
Mal3g3933 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 436 486 IPR000504 GO:0003723
Mal3g3933 634 Gene3D - 406 504 IPR012677 -
Mal3g3933 634 Gene3D - 42 140 IPR012677 -
Mal3g3933 634 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 359 547 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal3g3933 634 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 1 150 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3933 Mal-Chr3 117466088 117470965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3933 363 520 Eukaryotic Initiation Factors Gene Family AT5G27640 49.704 2.31e-43 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3933 K03253 - gmx:100779711 182.956