Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3904 ATGGCACCCAATCCGAAAGTTGTAGCGGCCTACCGCGCAATGTCGAGTCTTGGGATTGAGGAATACAAAGTGAAACCAGTTTTGAAGAAACTTCTTAAATTGTATGACAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCTGATGCTATTTTCGACGAGGATGAAAATCAGGAGTTGCAGCCGGAGCAGGAAAAGAAAAACAAGGAAGGGGAGGTGGTTGAGGAAGCTCGTCAAGAAGAGAGAGTGCGACCTCTGAAGAGGTTGAAATTAAGAGGCCAAGACGGTCAACCTTCACGCCTTCTGACTAGCGGTGGCTCAAGTTCAGCTGCCTTTCCATTGAAAACACCGAAACCAGAACCTGGCACAGTACCTGAAAGTACTACCAGAGTGCTGTCCAATGGAAATGCCGTTGTTGACAAGGGAAAGAAGCCTGTATCACCTGAAGAAACTCTAAGAGGGAGAAGATCTATATCTGATAGAACTCAACCTGCAGTCGTGTTTAGAGAACCGGCTGTTGAACCAAGAGCCTCTCCGTTGTCAAAAAGCAAAACGCCTCATGCTTACTCTTTTATCACCCCCAAGTCCGAGCCTGTTGATGAAGTGGAAGATGATTACATGGTTCCGATTTCAATGATTCTTCCTGAACCATCAAGTGTTCAAGATTCTTCAACGAAGAATGATACAGCCGGAGGGCAAGATGGCAACAACACTGTGGCATCACCATACAGAAATGAAAATGTTGAAGGTGTAGATATTCTTCCTTCATCAAATGAAGAAGCGACTTTTAATGCTGAGCTAGCCTCATCGTCTACAGGAGAGGAAGCATCTGTAAAGATAACACCAACAGTTGGCCTTCCAAAAGAATCTGAGGCAAATGGCACACTGATTGACGGAGGAAATAAAGATTCTTCCGTTGCAAATGGATCAATCTCTGTTAGGTCTTCTCCTGCCTCGGTTGCACCTCAAGTTCTCGTTTCTCCACCCTGCCCAAGTGGTCCAGATGATGCTGTACTAGTTTCCAAGGATGTAATGAATGATTTATCGGAAAATGGTGGTGGGAAGGAGTCAGGGGAACCTATGCCTCAAAATTCCTGTAATATAATGAATGCTCCAAAGCATCATCATACAATTGATGATACAAGGGCTGTTTGTGCTACCAATGACCTAACAAAGGGAGAAGAAAAAGTGAAAATTTCATGGGTGAATCATTCTAATAATGATATCCCACCTCCGTTCCACTACATACCCCGAAACTTGGTGTTCCGAGATGCATATGTTAATATTTCTCTATCTCGTATTGGGAGTGAAGATTGTTGTTCTACCTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGCAAATAAAACTGGAGGGGATTTTGCCTACACTGCACAAGGTGTACTAAAGGAAGTGTTCTTGGAAGAGTGTATTGCCATCAGCCGTGATCCTCAAAATCATTCCTATTGCACAGAATGCCCACTTGAAATATCAAAGAATGATGGTTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAATTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGCAATCGGATTGTCCAACGTGGAATAACTTGCAACTTGCAGGTGTTTTTTACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTGTATGCGAGTTCGTTGGAGAAATTTTAACTGTCGAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAACATACGTTCCCAATTTTATTGGATGCAGAATGGGACTCGGGAGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCAGCATCATATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTAGATGCAAACTTGATTGAGATCCCGGTTGAAGTTGAGGGTCCATCTCATCACTATTATCATTTTGCCTTCTTCACATCCAGAAAAATCACAGCACAGGAAGAGTTGACCTGGGATTATGGTATCGATTTTGATGACGATGATCAGCCTGTGGAGCTGTTTCGGTGCAAATGTGGCAGTAAATTCTGCAGGAATATGAAGCGCTCAAATAGAAGCATTAGATCGTCAATTGCTGGGTGA 2154 0.4271 MAPNPKVVAAYRAMSSLGIEEYKVKPVLKKLLKLYDKNWELIEEENYRALADAIFDEDENQELQPEQEKKNKEGEVVEEARQEERVRPLKRLKLRGQDGQPSRLLTSGGSSSAAFPLKTPKPEPGTVPESTTRVLSNGNAVVDKGKKPVSPEETLRGRRSISDRTQPAVVFREPAVEPRASPLSKSKTPHAYSFITPKSEPVDEVEDDYMVPISMILPEPSSVQDSSTKNDTAGGQDGNNTVASPYRNENVEGVDILPSSNEEATFNAELASSSTGEEASVKITPTVGLPKESEANGTLIDGGNKDSSVANGSISVRSSPASVAPQVLVSPPCPSGPDDAVLVSKDVMNDLSENGGGKESGEPMPQNSCNIMNAPKHHHTIDDTRAVCATNDLTKGEEKVKISWVNHSNNDIPPPFHYIPRNLVFRDAYVNISLSRIGSEDCCSTCMGNCVLSSKPCSCANKTGGDFAYTAQGVLKEVFLEECIAISRDPQNHSYCTECPLEISKNDGCLEPCKGHLKRKFIKECWSKCGCGKHCGNRIVQRGITCNLQVFFTSDGKGWGLRTLEDLPKGAFVCEFVGEILTVEELHERNLKYPKNGKHTFPILLDAEWDSGVVKDNQALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPSHHYYHFAFFTSRKITAQEELTWDYGIDFDDDDQPVELFRCKCGSKFCRNMKRSNRSIRSSIAG* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3904 717 MobiDBLite consensus disorder prediction 219 246 - -
Mal3g3904 717 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 715 - -
Mal3g3904 717 MobiDBLite consensus disorder prediction 218 246 - -
Mal3g3904 717 SUPERFAMILY SET domain 400 702 IPR046341 -
Mal3g3904 717 SMART set_7 546 685 IPR001214 GO:0005515
Mal3g3904 717 MobiDBLite consensus disorder prediction 63 97 - -
Mal3g3904 717 Gene3D SET domain 369 689 IPR046341 -
Mal3g3904 717 ProSiteProfiles SET domain profile. 546 679 IPR001214 GO:0005515
Mal3g3904 717 MobiDBLite consensus disorder prediction 288 317 - -
Mal3g3904 717 MobiDBLite consensus disorder prediction 146 160 - -
Mal3g3904 717 MobiDBLite consensus disorder prediction 59 199 - -
Mal3g3904 717 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 715 - -
Mal3g3904 717 CDD SET_SETDB-like 414 679 - -
Mal3g3904 717 MobiDBLite consensus disorder prediction 100 114 - -
Mal3g3904 717 SMART preset_2 390 530 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal3g3904 717 MobiDBLite consensus disorder prediction 300 317 - -
Mal3g3904 717 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Mal3g3904 717 ProSiteProfiles Pre-SET domain profile. 442 543 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal3g3904 717 Gene3D - 1 60 IPR043017 -
Mal3g3904 717 Pfam Pre-SET motif 394 538 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mal3g3904 717 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 716 IPR025776 -
Mal3g3904 717 Pfam SET domain 558 679 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3904 Mal-Chr3 116997752 117003984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3904 384 702 Su(var)3-9 homologs AT1G73100 29.762 1.28e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal3g3904 Pre-SET 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3904 - - cam:101500192 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3904 3 116997752 117003984 Mal3g3904 3 116997752 117003984 ECH
Mal1g2555 1 35308175 35313610 Mal3g3904 3 116997752 117003984 PCT