Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3884 ATGCAAGATTCTGGAAAATCGATCATGGGTAAAAGCAATAGTAAATTATTGAATCCATGGATGCTTCATTTTCAGAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAGCTTCTTCAAGCAACCGGTTTTGTTGCCATGCAATCACTTGTTCTGCAGTTCCTGTTTGGCGGATAATACTTCGATTGGTTCTGAATGTGCTCTCTGTAACACCAAGTACTCTCAAAAAGATATAAGGCATGTGCCTTTTGTGGGAAACATTGTATCGATATATAAGAGCTTGGATGCGACCTTTTGTGCTAACGCTTTTCAGCAACGCTCTGCTGATAATACGAGGGTTTTGGAGCAGTGCCAAACTCTTCACAATTCAACACGTAGTAATAAGCAGGCTGATAAGGTTCTGCAGAATTCACGTATGTCAAATGAGGTTGGGGTTGGCAAGAACCACGGGTCTAGGATTCCAATGAATGGTAAAGCGAAGGAGCTTGAAATGTCTTGCAGGGTAGGTGTTGGCAACCACATCGGAGAGAAGCCTAATTCAATGGATTTGAACCAAGTGACACAATCAGCACCAGACAGCCCTCCATTTTGTGATACAAAAGGTTCTGATGATTGTTGCAGTGATCAAAACAGTGAAAAGCCACTCGATCTTGGGAGGTCTGAAAATTTGTCATTGAAAAGAGCAAGCACAGGACAAGGTAATTTGAAAGAAAGAATGTCTCAGTTCAGGACTGAAAGTTCTGCCTCTGAAAATGAGGATCTTATGAGAGATCTTAAGAGACAAAAGAATCTTACAAATGGAGATGGTATTGTTCAACAAAACACCTCATATCATAGCAAGCTTGTGGATTCCCGCTGTGACTTCGGCATTAAATCTGAAATGAACACTGGTGCACTCATCCCTTCAAATGAACCAAATGACTTGCACCCTAATACAAACATTTGTTCGTTTTGCCAGTCCTATAAAATTTCAGAGGCTACTGGGACAATGCTGCATTATTCAAATGGGATTTCAGTTACAGGAGATGCTGCAATGCATCCAAATGTCGTGCATGTTCATAAAGTTTGCATCGACTGGGCACCACAAGTGTATTTTGTTGGCGAAACTGTTAAGAATTTGAAGACAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACTAAATGTGGTATGAAGGGAGCTGCTCTTGGTTGCTACGTCAAATCATGTAGAAGAACTTATCATGTCCCTTGTGCAATGGACATCTCTACTTGCCGCTGGGATCATGTGGATTATCTCTTGTTGTGTCCTTGTCATTCAAATGTCGAATTTCCAAATGAGAAATCCAATCATAATAAACAGGCAACTCAGAAGCATCCTGTTTCATCTCATCTGTCATCTCAGCAGTCAAACCAACTGGGAGCTTTCCAGGATGATGGTAAAAAAATGGTTTTCTGTGGATCTGCTTTATCAAATGAAGAAAAGGTGCTGTTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGTCCAAGTGTTGGACCTCAGATGTCACACATGTGATCGCCGCAACTGATGCAAACGGAGCATGCTCTAGGACATTGAAAGTTTTGAGGGCTATTCTAAAGGGACAATGGATCCTAAAAATGGACTGGATAAGAGCATGCCTGAAAGCAATGAATCTTGTAGAAGAAGAACTGTATGAAATTGATCTTGACAACCAAGGGTGTCATGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGTGAGTATGATTTGAGTTATAAGAAATATCTTGAAGACTTAGTTGAAGGGGGAGGAGGTGTTGTTTTGAAAAGCAAAGATGATTTGGAAGTTGGAAGAGATGCAAATTTGCTGGCTGTTTACAATCTTGATCCCCCAGAAGGATGTGAGCTGGCGGATGAAGTTTCAATTCTTTGGCAGAGACTGACTGAAGCAGAGAGTTTAACTGCCAATACCGCTGGTCACACGTGGATTTTGGAATCAATTGCTGCATGCAAATTGCAGCCTTTTGTCAGCTAA 2067 0.417 MQDSGKSIMGKSNSKLLNPWMLHFQKLALELKCPLCLSFFKQPVLLPCNHLFCSSCLADNTSIGSECALCNTKYSQKDIRHVPFVGNIVSIYKSLDATFCANAFQQRSADNTRVLEQCQTLHNSTRSNKQADKVLQNSRMSNEVGVGKNHGSRIPMNGKAKELEMSCRVGVGNHIGEKPNSMDLNQVTQSAPDSPPFCDTKGSDDCCSDQNSEKPLDLGRSENLSLKRASTGQGNLKERMSQFRTESSASENEDLMRDLKRQKNLTNGDGIVQQNTSYHSKLVDSRCDFGIKSEMNTGALIPSNEPNDLHPNTNICSFCQSYKISEATGTMLHYSNGISVTGDAAMHPNVVHVHKVCIDWAPQVYFVGETVKNLKTEVARGAKLKCTKCGMKGAALGCYVKSCRRTYHVPCAMDISTCRWDHVDYLLLCPCHSNVEFPNEKSNHNKQATQKHPVSSHLSSQQSNQLGAFQDDGKKMVFCGSALSNEEKVLLINFASKVGATVSKCWTSDVTHVIAATDANGACSRTLKVLRAILKGQWILKMDWIRACLKAMNLVEEELYEIDLDNQGCHGGPKAGRLRALANEPKLFSGLKFYFSGEYDLSYKKYLEDLVEGGGGVVLKSKDDLEVGRDANLLAVYNLDPPEGCELADEVSILWQRLTEAESLTANTAGHTWILESIAACKLQPFVS* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3884 688 SUPERFAMILY BRCT domain 587 685 IPR036420 -
Mal3g3884 688 Pfam PHD-like zinc-binding domain 354 432 - -
Mal3g3884 688 Gene3D BRCT domain 585 681 IPR036420 -
Mal3g3884 688 SUPERFAMILY RING/U-box 30 93 - -
Mal3g3884 688 SMART BRCT_7 466 552 IPR001357 -
Mal3g3884 688 SMART BRCT_7 585 681 IPR001357 -
Mal3g3884 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 435 IPR013083 -
Mal3g3884 688 CDD BRCT_Bard1_rpt1 477 555 - -
Mal3g3884 688 SMART ring_2 33 70 IPR001841 -
Mal3g3884 688 Pfam Zinc finger, C3HC4 type (RING finger) 33 70 IPR018957 GO:0046872
Mal3g3884 688 ProSiteProfiles BRCT domain profile. 583 688 IPR001357 -
Mal3g3884 688 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 13 686 IPR031099 GO:0006281|GO:0006974
Mal3g3884 688 Pfam BRCT domain, a BRCA1 C-terminus domain 585 685 IPR001357 -
Mal3g3884 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 104 IPR013083 -
Mal3g3884 688 ProSiteProfiles Zinc finger RING-type profile. 33 71 IPR001841 -
Mal3g3884 688 SUPERFAMILY BRCT domain 476 563 IPR036420 -
Mal3g3884 688 Pfam BRCA1 C Terminus (BRCT) domain 474 549 IPR001357 -
Mal3g3884 688 MobiDBLite consensus disorder prediction 175 236 - -
Mal3g3884 688 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Mal3g3884 688 ProSiteProfiles BRCT domain profile. 472 562 IPR001357 -
Mal3g3884 688 MobiDBLite consensus disorder prediction 179 196 - -
Mal3g3884 688 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 13 686 - -
Mal3g3884 688 Gene3D BRCT domain 473 578 IPR036420 -
Mal3g3884 688 ProSiteProfiles Extended PHD (ePHD) domain profile. 313 433 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3884 Mal-Chr3 116749292 116755109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3884 30 82 C3H Transcription Factor Family AT3G07200 35.849 1.16e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3884 3 116749292 116755109 Mal3g3884 3 116749292 116755109 ECH