Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3865 ATGGGTTTGAGAGACATAGGAGCTTCACTACCTCCTGGATTTCGATTTTATCCAAGCGATGAAGAATTGGTGTGTCACTATCTTTACAAAAAGATCACAAATGAAGAAGTTCTTAAGGGTACTTTGATTGAAATTGACCTTCACATATGTGAACCATGGCAACTTCCTGAGGTGGCAAAGCTTAATGCAAATGAATGGTATTTCTTTAGCTTCCGGGACCGAAAATATGCAACTGGATTTAGAACAAACAGAGCAACAATATCTGGGTATTGGAAAGCAACTGGGAAAGATCGAATGGTGTTAGATCCAATCACACAAGAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAACAGAGCTCCAAATGGTATCAAAACAGGGTGGATTATGCATGAATTTCGTTTGGAGACACCACATATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGACAATAATAATAGTTCCAAACTCAACACACAACAATTCATGTATGAGACAATACCTTTGATGTCATCATCTCCAACAAATTGCCAAACCATCCCTAGTGGCTATAACAAACTTGATTCTTTTTCTTCACCCATGACAACACTTCATCATTTAAATCCAAACCAAAACAATTCTTCTTCGATGGTGAATCTCCTTCAATACTCTCGTGGAACAAATCCAAATAATAATAGCACGGTTACTCAAATTAGTTCAAAAGGTGATGATGGTTATGGATTTTTGTGGAACATGGATTTGGAAGAAAATAGCCTAGAAGATGGTGTGGCTTCAAACTTGGACGCAATAAGATTTGAGGTTGATAATAATAATAATATGGTCTTACTATAA 861 0.3751 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLIEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRMVLDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNNSSKLNTQQFMYETIPLMSSSPTNCQTIPSGYNKLDSFSSPMTTLHHLNPNQNNSSSMVNLLQYSRGTNPNNNSTVTQISSKGDDGYGFLWNMDLEENSLEDGVASNLDAIRFEVDNNNNMVLL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3865 286 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Mal3g3865 286 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 280 - -
Mal3g3865 286 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Mal3g3865 286 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 280 - -
Mal3g3865 286 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Mal3g3865 286 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3865 Mal-Chr3 116541586 116548181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3865 6 159 NAC Transcription Factor Family AT1G56010 58.642 7.30e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal3g3865 NAM 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3865 - - gmx:100806284 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3865 3 116541586 116548181 Mal3g3865 3 116541586 116548181 ECH
Mal3g3865 3 116541586 116548181 Mal1g2523 1 34883902 34887918 PCT