Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3860 ATGGCTACGGAAAAAGTTCATATTAAAATTATGTTCATTGGTCATGCCGATTCTGGGAAGTCAACTATTGCTAGTCATTTGATCTACAAGCTTGGAGGTATTGACAAGAGTGTCGTTGAGGGATTTGAGAAAGAAGCTCCTGTAATAAACAAGGATGCTTGGGTGCTTGACAAGCTCAAGTCTGAGTATGAAAGAGGTATCACAATTGACAAGAGTGTCATTGAGAGAATTGAGAAAGAAGCTGCTTATCGTTCATTGAAGTATGCTTGGGTGCTTGAGAAGCTCAAGTCTGAGCGTGAAAGAGGTATCACAATTGACATTGATCTGTCCAAGTTTGAGACAACCAAGTACTACTGCTCTGTCATTGTTGCCCATGCACACATGGATTTCTTCCTTAAGACCATGATCACCAGAACGTCCCAACCTGACTGTGTTGTTCTAGTCATTGATTCCACTACTAGTGGATTTGAAACTTCTAAGGATCGTCAGGCCCGCGCACTTGCTCATCTTTCCTTTGTTTTTGGTGTGAAGGAAATAATCTGCTGCTGCAACAAGATTGATGCCACTATACCCAAATACTCCAAGAAGAGGTTTTCAGAAATTGTGTTGAAGCTTATGCCCTTTTTGTGGATGGTTGGCTATCATCAATACAAAACTCGATTTGTTCCCATCTCTGGTTTTGACGGAGATAACTTGATTGAGCGCTCTACTAATTTTGATTGGTACAAAGGTCAAACCCTTCTTGAAGCTCTTGACCATTTCAACGAACCAATATGGCCATCAATCAAGGGGCTTGACGCTGTTACCCGACTCAAGTTCAACTTGCCTATTGTTTCGGAAAATGCTCTTGCTGCCAGAGCTAATATTGAGTCAAATTGCTGGGAGTTGCAGCCTCAAAATAAGATGGGGATGGTCTCAGGACCACATCTAGATGAAAAGCTTGTAAGGAGCATTGTTGACGAGATCAAACAAGTCATCATGGCCAGTTCATCCAGAAATCGTGCAAGAGCAGAAGAAGAAAGTGAACTCTATGAGTCTGATGATGAAGAAGGTGTATTCCTCAAGGAAAAAAATGAGCAAGAAGTAGAACTTTTTGATAATATTGGTGCTTGCTTGGGGACTTTGATAAAAACATTTAGGGCATCTTTTTTGCCTTTCTTTGAAGAGATTTCGTCATCCCTAACACCTATGTTTGGTAAAGACAAAACCTCAAAGGAAAGGAGGATTGCCATTTGTATATTTGACGACGTTGCTGAGCACTGCCGCGAAGCAGCTCATAAATATTATGGTTCGTTTCTTCCATTCTTGCTTGAAGCTTGCAATGATGAATGTTCAGATGTTCGACAGGCAGCTGTTTATGGGGTTGGTGTTTGTGCTGAGTTTGGTGGATCTGTTTTCAAACCCCTTGTTGCAGAGGCACTTGCAAGGTTAAATGCTGTGATAACACATCCAAATGCACAGCATTCTGATAATGTAATGGCATGTTCTAATGCTGTTTCAGCTCTTGAAAAAATATGCCAGTTCCACCATGATAGCATAAATGCAGCACAGGTTGATGAGAAGGTATTGATTCAACTGAGAAGGCTACGGATTTGGTGA 1599 0.4128 MATEKVHIKIMFIGHADSGKSTIASHLIYKLGGIDKSVVEGFEKEAPVINKDAWVLDKLKSEYERGITIDKSVIERIEKEAAYRSLKYAWVLEKLKSERERGITIDIDLSKFETTKYYCSVIVAHAHMDFFLKTMITRTSQPDCVVLVIDSTTSGFETSKDRQARALAHLSFVFGVKEIICCCNKIDATIPKYSKKRFSEIVLKLMPFLWMVGYHQYKTRFVPISGFDGDNLIERSTNFDWYKGQTLLEALDHFNEPIWPSIKGLDAVTRLKFNLPIVSENALAARANIESNCWELQPQNKMGMVSGPHLDEKLVRSIVDEIKQVIMASSSRNRARAEEESELYESDDEEGVFLKEKNEQEVELFDNIGACLGTLIKTFRASFLPFFEEISSSLTPMFGKDKTSKERRIAICIFDDVAEHCREAAHKYYGSFLPFLLEACNDECSDVRQAAVYGVGVCAEFGGSVFKPLVAEALARLNAVITHPNAQHSDNVMACSNAVSALEKICQFHHDSINAAQVDEKVLIQLRRLRIW* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3860 532 Coils Coil 327 347 - -
Mal3g3860 532 SUPERFAMILY ARM repeat 315 528 IPR016024 -
Mal3g3860 532 Pfam HEAT repeat 432 460 IPR000357 GO:0005515
Mal3g3860 532 Pfam Importin repeat 6 309 394 IPR041389 -
Mal3g3860 532 PANTHER TRANSLATION FACTOR 1 71 - -
Mal3g3860 532 PANTHER TRANSLATION FACTOR 69 269 - -
Mal3g3860 532 Gene3D - 1 75 IPR027417 -
Mal3g3860 532 Gene3D - 76 257 IPR027417 -
Mal3g3860 532 PRINTS GTP-binding elongation factor signature 179 188 IPR000795 GO:0003924|GO:0005525
Mal3g3860 532 PRINTS GTP-binding elongation factor signature 64 72 IPR000795 GO:0003924|GO:0005525
Mal3g3860 532 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Mal3g3860 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 250 IPR027417 -
Mal3g3860 532 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 258 IPR000795 GO:0003924|GO:0005525
Mal3g3860 532 Pfam Elongation factor Tu GTP binding domain 87 253 IPR000795 GO:0003924|GO:0005525
Mal3g3860 532 Pfam Elongation factor Tu GTP binding domain 7 77 IPR000795 GO:0003924|GO:0005525
Mal3g3860 532 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 1 71 - -
Mal3g3860 532 PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED 69 269 - -
Mal3g3860 532 Gene3D - 280 526 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3860 Mal-Chr3 116420104 116425271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3860 1 265 Eukaryotic Initiation Factors Gene Family AT1G07930 58.889 4.13e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3860 K20222 - gmx:100780183 316.62