Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3850 ATGGGAAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTCAAGAAGAAGATCGAATCCTCATCAATCACATAAACACTTATGGCCATTCCAATTGGCGTGCTCTTCCCAAACAAGCTGGGTTGTTAAGGTGTGGTAAGAGTTGCAGATTGCGATGGGCAAATTATCTGAAGCCGGATATCAAACGGGGTAACTTCACCAAAGAAGAAGAGGATGCAATAATCAATTTACATCAAATGTTGGGAAACAGATGGTCAACTATTGCAGCAAGGTTACCAGGGCGAACAGACAACGAGATAAAAAACGTATGGCACACCCATTTGAAGAAAAGGCTAACACAAAACCAACATGCACACAACAACAGCCCAAAACGAAATAAAAAGCAAACCAACTTGGACTTTGATGTCGACGCTTCCAAATCAGACCAAGATGCCAAACAAGAACAAAATCATGATGATGATAGGCCACAATGTTCTAGTGACATGTCATCCCATAATAATAGTAGCATTGCTACTTCAAATAATGATAATGATATATCCATAAACAACAATAATAATGGTGTTGTTGATTCGGCAGAAAATAATTTTGCATTGGATGATGATTTTTGGTCGGAAGTTTTGTCATCTGATAATTCTAGCAATGAGACAAGTGGTGTTATGGATATTGGTGCTGATAATTATCAATTTCAAGCTCCATTAGTGACTGAAGAAGGAGTGTTTAGTTCTAGTTCATTGAGTTTATGCCAAGACATGGACTTTTGGCATGATGTTTATGCGAGAGCTGAGGAAATAACCGAGTTACTAGAATTATGA 825 0.3891 MGRAPCCEKMGLKKGPWTQEEDRILINHINTYGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLTQNQHAHNNSPKRNKKQTNLDFDVDASKSDQDAKQEQNHDDDRPQCSSDMSSHNNSSIATSNNDNDISINNNNNGVVDSAENNFALDDDFWSEVLSSDNSSNETSGVMDIGADNYQFQAPLVTEEGVFSSSSLSLCQDMDFWHDVYARAEEITELLEL* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3850 274 CDD SANT 69 112 IPR001005 -
Mal3g3850 274 MobiDBLite consensus disorder prediction 164 190 - -
Mal3g3850 274 CDD SANT 16 61 IPR001005 -
Mal3g3850 274 PANTHER TRANSCRIPTION FACTOR MYB15 1 271 - -
Mal3g3850 274 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal3g3850 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal3g3850 274 SMART sant 66 114 IPR001005 -
Mal3g3850 274 SMART sant 13 63 IPR001005 -
Mal3g3850 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal3g3850 274 Gene3D - 11 67 - -
Mal3g3850 274 Gene3D - 68 190 - -
Mal3g3850 274 MobiDBLite consensus disorder prediction 142 163 - -
Mal3g3850 274 MobiDBLite consensus disorder prediction 142 190 - -
Mal3g3850 274 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 271 - -
Mal3g3850 274 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal3g3850 274 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Mal3g3850 274 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal3g3850 274 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3850 Mal-Chr3 116330063 116332183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3850 1 274 MYB Transcription Factor Family AT2G31180 48.921 2.27e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal3g3850 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3850 K09422 - gmx:100775603 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3850 3 116330063 116332183 Mal3g3850 3 116330063 116332183 ECH
Mal3g3850 3 116330063 116332183 Mal1g4267 1 97063055 97142595 PCT