Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3839 ATGGATTTTGATTATCCTCTCTTCCAAAGCCAAAATCAAAACCCTATATACTTCCCTGAAAATTGCTACTCTAATAATTTCTCTTGGGAACTAGAAGATTTCACTAATTTCTTTAGTGATGACATCAACTTCAACAACCACTCGCAATCACTAACAAATGAATCATTATCATTATCATCAATGGAATCGAACTCTTCTACATCCGTACAAAGCAATGAATCACTAGAAGTCTCATCAAATACAACTTATACACAAGTGACCAAAGAAACACAAACATCATCACCACCTCTACCGCCGCCGATTAAGGAAAGTAACAAAAGAGCATATAGAGGAGTAAGAACTAGGCCATGGGGAAAATTCGCGGCAGAGATAAGAGATTCAACAAGAAAAGGTATTAGAGTGTGGATTGGAACATTCGACACGGCCGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGTTCATTGGCAGTGTTGAATTTTCCAGAGGAAGTAGTGAGAGAATCACTTAAAGAAATGGCTAGTAATTCTAAGCCTTTGGAAGAAGGTACTTCTCCTGTATTGGCACTCAAGAGAAAACATATCATGAGAAAAAAGTCCAATAAGGTTAGTAAAAAGAAAATCAAAAGTGATTATCATAGTGATGATCAAGTTAAGGTTGAGATTGAAAACAATACTAATTCTCAAAATGTGCTAGTGTTTGAGGATTTGGGTGCTGAATATCTGGAGCAACTATTGAGCTTAACTTATTAA 765 0.3634 MDFDYPLFQSQNQNPIYFPENCYSNNFSWELEDFTNFFSDDINFNNHSQSLTNESLSLSSMESNSSTSVQSNESLEVSSNTTYTQVTKETQTSSPPLPPPIKESNKRAYRGVRTRPWGKFAAEIRDSTRKGIRVWIGTFDTAEAAALAYDQAALSTRGSLAVLNFPEEVVRESLKEMASNSKPLEEGTSPVLALKRKHIMRKKSNKVSKKKIKSDYHSDDQVKVEIENNTNSQNVLVFEDLGAEYLEQLLSLTY* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3839 254 SMART rav1_2 108 172 IPR001471 GO:0003700|GO:0006355
Mal3g3839 254 SUPERFAMILY DNA-binding domain 108 167 IPR016177 GO:0003677
Mal3g3839 254 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Mal3g3839 254 Gene3D AP2/ERF domain 108 168 IPR036955 GO:0003700|GO:0006355
Mal3g3839 254 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Mal3g3839 254 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Mal3g3839 254 MobiDBLite consensus disorder prediction 58 92 - -
Mal3g3839 254 MobiDBLite consensus disorder prediction 58 109 - -
Mal3g3839 254 ProSiteProfiles AP2/ERF domain profile. 108 166 IPR001471 GO:0003700|GO:0006355
Mal3g3839 254 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 251 - -
Mal3g3839 254 PANTHER DNA-BINDING DOMAIN 23 251 IPR044808 GO:0003700|GO:0009873
Mal3g3839 254 CDD AP2 109 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3839 Mal-Chr3 116239886 116240650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3839 72 251 AP2-EREBP Transcription Factor Family AT3G23240 52.174 1.20e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal3g3839 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3839 K14516 - gmx:100779524 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3839 3 116239886 116240650 Mal1g2499 1 34563385 34564116 PCT