Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3838 ATGGAGGGAGAGGGAAATAAAAATGTAGAGGTTCGATATAGAGGAATTCGTAGGAGACCATGGGGTAAATTTGCAGCAGAAATTCGTGACCCAACAAGAAAAGGGTCTAGAATTTGGCTTGGAACATTTGATACAGCAGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCACAAAGCCATTCTCAACTTCCCAAATGATTTTGCTCATTCTATTTCTAGTACTAATTACTCCAATTCATATCAACAAGAAGATGATGATACTTTTGATCAATTGGAATGCTTGGACAACAAGTTGTTGGAAGAACTTCTTGGTATGGTGCAAGATGATGGTGCAGGTAGCTCTAGACGTGAATAG 372 0.3978 MEGEGNKNVEVRYRGIRRRPWGKFAAEIRDPTRKGSRIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNDFAHSISSTNYSNSYQQEDDDTFDQLECLDNKLLEELLGMVQDDGAGSSRRE* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3838 123 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Mal3g3838 123 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Mal3g3838 123 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Mal3g3838 123 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Mal3g3838 123 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Mal3g3838 123 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Mal3g3838 123 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Mal3g3838 123 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Mal3g3838 123 PANTHER DNA-BINDING DOMAIN 9 86 IPR044808 GO:0003700|GO:0009873
Mal3g3838 123 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 9 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3838 Mal-Chr3 116210961 116211332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3838 10 109 AP2-EREBP Transcription Factor Family AT3G23230 51.282 2.96e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal3g3838 AP2 9.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3838 - - gmx:100778998 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3838 3 116210961 116211332 Mal3g3838 3 116210961 116211332 ECH
Mal3g3838 3 116210961 116211332 Mal1g2495 1 34527995 34528432 PCT