Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3837 ATGGATTTTTATTCTTCTGCAAATTTATTTGATATTTCATGGGAAGAATTGTTTTTGTTCAACAACATTGATTCAAGTTCTTCATCATCTAGTGGTGAAATGGATTTACAAGAACTCACATCCAATATTACATACAATGGTCACGTTGATGAAGAAAACTCACCTCTACCATCACTCGCTCAAAAAACCCTAGGTCCAGAACCACTTCCGTCATGCAAAAGTACTAACCAGTCACATGTGAATCCAACAAAACGAGAGAAGAGGCTCTATAGAGGAGTGAGGACACGACCGTGGGGGAAATTCGCAGCAGAGATAAGGGACACAACAAGAAATGGTGTTCGAGTGTGGATTGGAACATTTAACACAGCTGAAGCAGCAGCTTTAGCTTATGACCAAGCAGCTTTCTTAACGCGAGGATGTAGGGCTATCCTTAACTTCTCCGAGCATGTTGTGAAGGAATCTCTTCAAAACATGAATTTTAAGACATTGTTAAATAGTGGTTGCTCACCTTTATTGGAACTAAAAAGGATGCATGTCTTGAGAACAAAATCTAAGACTTCTAGTAAAAAGGCTAAAAGGGACTCCAAGAACATGGTGTTGAACAATGCTCAAAATGTACTGGTGTTGGAAGATTTGGGTTCTGAGTATCTAGAGCAACTTTTGGTGAGCTCTATTTCCCTTGAGGGTGTTGGAAATCAAGTCTTTATACAAAGCTAA 717 0.3919 MDFYSSANLFDISWEELFLFNNIDSSSSSSSGEMDLQELTSNITYNGHVDEENSPLPSLAQKTLGPEPLPSCKSTNQSHVNPTKREKRLYRGVRTRPWGKFAAEIRDTTRNGVRVWIGTFNTAEAAALAYDQAAFLTRGCRAILNFSEHVVKESLQNMNFKTLLNSGCSPLLELKRMHVLRTKSKTSSKKAKRDSKNMVLNNAQNVLVLEDLGSEYLEQLLVSSISLEGVGNQVFIQS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3837 238 SMART rav1_2 89 153 IPR001471 GO:0003700|GO:0006355
Mal3g3837 238 CDD AP2 90 149 IPR001471 GO:0003700|GO:0006355
Mal3g3837 238 Pfam AP2 domain 90 135 IPR001471 GO:0003700|GO:0006355
Mal3g3837 238 Gene3D AP2/ERF domain 89 149 IPR036955 GO:0003700|GO:0006355
Mal3g3837 238 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Mal3g3837 238 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Mal3g3837 238 MobiDBLite consensus disorder prediction 50 89 - -
Mal3g3837 238 ProSiteProfiles AP2/ERF domain profile. 89 147 IPR001471 GO:0003700|GO:0006355
Mal3g3837 238 PANTHER DNA-BINDING DOMAIN 6 225 IPR044808 GO:0003700|GO:0009873
Mal3g3837 238 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 225 - -
Mal3g3837 238 SUPERFAMILY DNA-binding domain 89 148 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3837 Mal-Chr3 116202298 116203014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3837 73 224 AP2-EREBP Transcription Factor Family AT3G23240 49.390 2.33e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal3g3837 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3837 K14516 - gmx:100818907 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3837 3 116202298 116203014 Mal1g4722 1 112692759 112693409 PCT
Mal1g2490 1 34386413 34387902 Mal3g3837 3 116202298 116203014 PCT