Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3828 ATGGAAGATGAGTTAAAGGAAAAGGTGAAACAAGATGAGTTACCAAAGCAAATCAAGTATAGAGGAGTAAGGATAAGGCCATGGGGAAAATTTGCGGCTGAGATTCGAGATTCGGCTAGGCATGGTGCTCGAGTTTGGCTTGGTACATTTAACACTGCTGAGGAAGCTGCAAGAGCTTATGATCGTGCTGCTTTTGCAATGAGAGGTTCTTCTGCTATTCTCAACTTTCCTCATGAACATTTTCCATGCAATGTGGTTTATAACCCTTCTAAGCCCTCTTCTTCATCCAATTCAACCTCATCTTCATCTTCAAATGTTAAATCAGAACTTGGTGAACAAGTTATAGAGTTTGAGTATTTGGATGAAAAATTGTTAGAGGAACTCTTGGATTTTGAGAGTGTCATCAACCAGGATTTGTTCAAGTAG 426 0.3967 MEDELKEKVKQDELPKQIKYRGVRIRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFAMRGSSAILNFPHEHFPCNVVYNPSKPSSSSNSTSSSSSNVKSELGEQVIEFEYLDEKLLEELLDFESVINQDLFK* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3828 141 MobiDBLite consensus disorder prediction 89 108 - -
Mal3g3828 141 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Mal3g3828 141 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Mal3g3828 141 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Mal3g3828 141 PANTHER DNA-BINDING DOMAIN 13 133 IPR044808 GO:0003700|GO:0009873
Mal3g3828 141 PANTHER OS09G0571700 PROTEIN 13 133 - -
Mal3g3828 141 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Mal3g3828 141 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Mal3g3828 141 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Mal3g3828 141 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Mal3g3828 141 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3828 Mal-Chr3 116104317 116104742 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3828 16 132 AP2-EREBP Transcription Factor Family AT3G23230 62.500 1.66e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal3g3828 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3828 - - mtr:MTR_7g096700 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3828 3 116104317 116104742 Mal3g3828 3 116104317 116104742 ECH
Mal3g3828 3 116104317 116104742 Mal1g4017 1 85182723 85183400 PCT
Mal1g2489 1 34374585 34375019 Mal3g3828 3 116104317 116104742 PCT