Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3827 ATGGCACAATCTTCTTCACACTATGCTTTACTCATTTTTGCAATTGTTATACTAAGCATCTTGGTCACTACTTTCATATTTATCACCTATTTGATTTTTGTGACCAAATGCTGCTTAAATTGGCACCCATTGAGATGGATTTCCATCCTGCCACCTCCACAAAATGAAGAACCCTTCATAACATTCTCTCCAAGGATTTGGAACCGCGGCGTCGATGAATCCGTCATCCAAGAAATCCCAACATTTCAATTCACAAAAGGAGAAGGTGATGGTGATAATCATCAAAGTGTAAAGGGTTGTGTTGTTTGTTTGAATTCTTTCCAAGAAAAAGATATGTTAAAAGTACTTCCCAATTGCAGCCACCACTTTCACTTGGATTGCATTAACATTTGGCTTCAAACAAATGCAAATTGCCCTCTTTGTAGAACAAGCATTTCAGGTAACACACAATTTCCGACGAACCGTATCATAGCAGCACCAAGCTCTTCTCCACAGGATTCTCAATTACTATCTAACATGGGTAGTGATGAAGATTTTGTGGTCATCGAATTGTGGGGAGAAAGAGAGAATCGGGGAACACGGTCTCAGATGCAGCTAGAGAGAAATGAGTCACGGGAAAGACTAGAATCACTGAGTAGAACTCACTCTACAACTAGGAGGACGGTGGAGGAGACGAAGGTGGTGCAGTTGAAACCATGGAAGTGCCACCATGGTTCCATAATGGGTGATGAGTGTATTGATGTTAGAAAAAAAGATGATCAGTTTTCTATTCAGCCTATTAGAAGATCTTTCTCATTGGATTCTGCAAGTGATAGAAAAGTTTACTCGGATGTTCAAGACATCATTCAACAGAATAATAGGCATCAAAATGAGGATTGTGGTAATGAAGATTGTAATAGTAGCAGAGGTCGAAGATCATTCTTTCCATTTCGTTATGGTAGGGTATAA 948 0.3956 MAQSSSHYALLIFAIVILSILVTTFIFITYLIFVTKCCLNWHPLRWISILPPPQNEEPFITFSPRIWNRGVDESVIQEIPTFQFTKGEGDGDNHQSVKGCVVCLNSFQEKDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTQFPTNRIIAAPSSSPQDSQLLSNMGSDEDFVVIELWGERENRGTRSQMQLERNESRERLESLSRTHSTTRRTVEETKVVQLKPWKCHHGSIMGDECIDVRKKDDQFSIQPIRRSFSLDSASDRKVYSDVQDIIQQNNRHQNEDCGNEDCNSSRGRRSFFPFRYGRV* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3827 315 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 314 - -
Mal3g3827 315 SUPERFAMILY RING/U-box 82 149 - -
Mal3g3827 315 Coils Coil 194 214 - -
Mal3g3827 315 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Mal3g3827 315 SMART ring_2 100 141 IPR001841 -
Mal3g3827 315 MobiDBLite consensus disorder prediction 191 218 - -
Mal3g3827 315 CDD RING-H2_PA-TM-RING 100 142 - -
Mal3g3827 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
Mal3g3827 315 Pfam Ring finger domain 100 142 IPR001841 -
Mal3g3827 315 PANTHER RING-H2 FINGER PROTEIN ATL16 3 314 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3827 Mal-Chr3 116099438 116100385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3827 4 288 C3H Transcription Factor Family AT1G04360 41.914 1.09e-70 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3827 K19041 - gmx:100809883 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3827 3 116099438 116100385 Mal3g3827 3 116099438 116100385 ECH
Mal3g3827 3 116099438 116100385 Mal1g4717 1 112519336 112520319 PCT
Mal1g2479 1 34203354 34204361 Mal3g3827 3 116099438 116100385 PCT