Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal3g3812 | ATGGCTTCCGTTGAAGAGCCCACTGTCCCCGCCGTCGAGCAACCCATTGTGGAGGAGCCGGCCGCCGTCGACACCCTCCCCCCTGTTGTCAATGAATCCGACGAGCCTACTGCCGCTAAGCCCAAAAAAGCCCCCAAAGAGCCCAAACCCAGAAAGCCCTCTGCCAGGAACCCTCGCACTCACCCTTCCTATGAAGAGATGGTGAAGGATGCAATTGTGACTCTGAAAGAGAAGAACGGTTCAAGCCAGTATGCTTTGGCGAAGTTCATTGAAGAGAAGTACAAGGATCTTCCATCGAACTTCAAGAAGATTCTGCTCATTCAGATCAAGAAGCTTGTTGCTTCTGGGAAGCTTGTGAAGATCAAGGCATCTTACAAGTTACCATCAGCTAAGTCTGCCGCTCCAGCTAAGAAGCCCGCTGCTGCAAAGCCCAAACCCAAGCCCAAGGCGAAAGCACCTGCCGCCGCCAAGGCTAAAGCTCCAGCTGCTAAGGCTAAGGCTAAGGCTAAGGCTAAAGCATCTCCTGCTAAGGCTAAGCCCGCTGCTAAGGCTAAGCCCGCTGCGAAGGCTAAGCCTGCTGCTAAGGCCAAGCCTGCTGCAAAGGCAAAGCCTGCTGCTAAGCCCAAGGCGAAGGCTCCTGTTGCTAAGGCCAATGCTGTACCTGTAGCTGCTGCGAAGCCAAAGCCCAAGGCGAGGGCACCTGTTGCTAAGGCCAATGCTCCACCTGTTGTTGTTAGGGCTGCTGCAAGGGCGAAGCCTGCTGCGAATGCGAGGCCTGCTAAGGCTTCAAGAACTTCGACAAGGACATCCCCTGGGAAGAGAGCTGCTGCCGCGAAACCGGCCCCGGCTAAGAAGGCTGCAACACCGGTGAAGAAGGCGGCTCCGGTGAAGAAAGCTGCTCCGGCGAAGAAGGCTGCTGCTGCTTCCAAGGGAGCGAAATCTCCGGCTAGGAAGGCTCCAGCAAAGAGGGGGGGTAGGAAGTGA | 984 | 0.562 | MASVEEPTVPAVEQPIVEEPAAVDTLPPVVNESDEPTAAKPKKAPKEPKPRKPSARNPRTHPSYEEMVKDAIVTLKEKNGSSQYALAKFIEEKYKDLPSNFKKILLIQIKKLVASGKLVKIKASYKLPSAKSAAPAKKPAAAKPKPKPKAKAPAAAKAKAPAAKAKAKAKAKASPAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPKAKAPVAKANAVPVAAAKPKPKARAPVAKANAPPVVVRAAARAKPAANARPAKASRTSTRTSPGKRAAAAKPAPAKKAATPVKKAAPVKKAAPAKKAAAASKGAKSPARKAPAKRGGRK* | 328 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal3g3812 | 327 | SMART | h15plus2 | 58 | 124 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mal3g3812 | 327 | PANTHER | HISTONE H1 | 188 | 327 | - | - | |
| Mal3g3812 | 327 | PANTHER | HISTONE H1 | 5 | 204 | - | - | |
| Mal3g3812 | 327 | Pfam | linker histone H1 and H5 family | 61 | 124 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mal3g3812 | 327 | PRINTS | Histone H5 signature | 74 | 91 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mal3g3812 | 327 | PRINTS | Histone H5 signature | 47 | 68 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mal3g3812 | 327 | PRINTS | Histone H5 signature | 219 | 238 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mal3g3812 | 327 | PRINTS | Histone H5 signature | 197 | 214 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Mal3g3812 | 327 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 60 | 129 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mal3g3812 | 327 | CDD | H15 | 58 | 127 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Mal3g3812 | 327 | SUPERFAMILY | "Winged helix" DNA-binding domain | 57 | 138 | IPR036390 | - | |
| Mal3g3812 | 327 | MobiDBLite | consensus disorder prediction | 36 | 66 | - | - | |
| Mal3g3812 | 327 | Gene3D | - | 56 | 139 | IPR036388 | - | |
| Mal3g3812 | 327 | PANTHER | HISTONE H1.1 | 188 | 327 | - | - | |
| Mal3g3812 | 327 | PANTHER | HISTONE H1.1 | 5 | 204 | - | - | |
| Mal3g3812 | 327 | MobiDBLite | consensus disorder prediction | 128 | 327 | - | - | |
| Mal3g3812 | 327 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal3g3812 | Mal-Chr3 | 115831891 | 115832988 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal3g3812 | 32 | 130 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 32.673 | 7.81e-10 | 57.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal3g3812 | K11275 | - | gmx:100795994 | 134.42 |