Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3810 ATGTCGAATGAAGTTGTGAAAGTGAAGAGAGAAACGATTATAGCATGCATGACTTGCCCACTTTGTAACAAGTTGTTCAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGACAAATTTACTGATGAGGATTTGGAATGCTGTCCAGTATGTAACATTGATTTGGGTTGTGTTCCACTTGAGAAATTAAGGCCTGACCACACTAAGCAAGATGTAAGGGCCAAAATCTTCCCCTTAAAGGGAAGAAAGGTGAACGCACCTGAACCTGAAGTTGTCGCCGCCTCAGTACCATTGCCAGCTAAAAGAAAGGAGAGATCTCTTTCATCTTTAGTGGTCAACACACCAAGGGTATCTGCGCAAACAACCATGACAGGAAGAAGAACGAAACCTACCAGAAAGGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAATCAGTTAAAAAAGAGGAAGAAGCATTGGAAGACCGTCCCGAGAGTTCAAGCTCACCCGCAACTTCAAATAAGTTGCGTCAGAACAATGGACAGAGTGAGGGTAGTCAATCCACCCCAAATAGAGTAACAGAGAACAATGCCGAAACATGTGATGCAAAGTTGGATCTTTGGAAACCGTTGAATTGTTTAGTAGAGGTCGCAAGCAGGACTAAATCTTTGAAGTCTAATAATATACAAGGGTCTGATGCTAAACCAGAACCTGTTCAAGCAAATGAGAGTGGCTCTCAAGCGCAGAAAATCAAAAATAAGGAAAAGAAACGTAAGGCAAAAGTTGAGGATGAAAATATTAGCCCATTTCCCGTTTCTTCAGATACAGCAAAACCCAATAAATTGCGCAGAGTACGTAGGAAAAAGGAAGCTTTTGGAGAATCAGGCATATCACCCCAAGCTGTGGTGGATTCTACCGGCAATAAACTCTTTAAGGGTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAATCAGGAAGGAGATGCACCCTTGCCACAAATTCCTGCAAGCTATGTGAGAATAAAAGATGGAAGTGTACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTCGATCTGACCAGTGAAACAGAGATTGAGATTATATGTATGGGACAACCAGTGCTCCCTACAATGACACTACATAATTTGGTTGAGTTGTGGCTTGATTCAACGGCGTCCACATCACACCGAATTCCGGCGATTATTGGATCCTCAGCAAAGGATTTTGTCATGGTACTCGCTTATGCTCGGAAGTCTCCACACCCTTGA 1287 0.4211 MSNEVVKVKRETIIACMTCPLCNKLFKQATTISECLHTFCRKCIYDKFTDEDLECCPVCNIDLGCVPLEKLRPDHTKQDVRAKIFPLKGRKVNAPEPEVVAASVPLPAKRKERSLSSLVVNTPRVSAQTTMTGRRTKPTRKASSLRSSSFSIEKSVKKEEEALEDRPESSSSPATSNKLRQNNGQSEGSQSTPNRVTENNAETCDAKLDLWKPLNCLVEVASRTKSLKSNNIQGSDAKPEPVQANESGSQAQKIKNKEKKRKAKVEDENISPFPVSSDTAKPNKLRRVRRKKEAFGESGISPQAVVDSTGNKLFKGGPIWFSLVASENQEGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEIEIICMGQPVLPTMTLHNLVELWLDSTASTSHRIPAIIGSSAKDFVMVLAYARKSPHP* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3810 428 SUPERFAMILY RING/U-box 14 78 - -
Mal3g3810 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Mal3g3810 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 IPR044807 GO:0004842
Mal3g3810 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 113 IPR013083 -
Mal3g3810 428 Gene3D - 303 397 - -
Mal3g3810 428 MobiDBLite consensus disorder prediction 229 286 - -
Mal3g3810 428 MobiDBLite consensus disorder prediction 115 198 - -
Mal3g3810 428 MobiDBLite consensus disorder prediction 115 151 - -
Mal3g3810 428 MobiDBLite consensus disorder prediction 152 167 - -
Mal3g3810 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 - -
Mal3g3810 428 MobiDBLite consensus disorder prediction 229 251 - -
Mal3g3810 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Mal3g3810 428 MobiDBLite consensus disorder prediction 168 198 - -
Mal3g3810 428 SMART ring_2 19 59 IPR001841 -
Mal3g3810 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3810 Mal-Chr3 115769937 115774739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3810 5 346 C3H Transcription Factor Family AT2G30580 52.738 2.03e-105 314