Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3788 ATGAACTATCTTTACCCGGTGAAAGAAGAGTATTTGGAAATAGAAGCAACATCGTCATCATCGACGTATGAAAGAGGAAGTGATGAGGGATCAACGGTTGTGATTCCACGGCCAATGGAGGGACTTCATGAAGTAGGACCACCACCATTTCTCACAAAAACATTTGATGTTGTGGAGGACCCCACAACTAGTCACATAGTTTCATGGAGCAGAGGTGGTGCTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAACTCAACACTTATGGTTTTAGAAAAATTGATCCTGATAAATGGGAGTTTGCAAATGAAGGATTTCTAAGAGGTCATAAGCATCTTTTAGCAAACATTAAGAGAAGGAGACAAACTTCACAACCTAGTACTACTATTTCTCAACAATCATCTCAAGGACATTGTGTTGAAGTTGGTCGTTTTGGATTAGATGAAGAAATTGATCATTTGAGGCGTGACAAACAAGTGTTAATGATGGAACTTGTGAAGCTTAGACAGCAACAACAGAATACAAGATCTATTCTTCAAGCAATGGAGGAAAGGCTACAAAGTACAGAAGTTAAGCAGAAACAAATGATGGCTTTTTTAGCTAGAGCTATGAAAAATCCAGCTTTTATTCAGCAGTTACTTCAACAGAAGGAAAAGAGAAAGGAGATTGAAGATGCTATTACTAAGAAGAGGAGAAGGCCTATTGAGTATGGAGAATCAAGTAATGGTGGTGATGGAAGGAGCAGTGTTAGATATGGATTTGAAGTGTCAGAGTTGGAAATGTTGGCTATGGAAATGCAGGGTCTTGGAAGAGGTGGTGGAGAACATGAGGAAGAGATTGAGGTAGGTTCTGCAGCTGTTGATTGGACAAGAATCTCTGATAGTTGA 945 0.3937 MNYLYPVKEEYLEIEATSSSSTYERGSDEGSTVVIPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWSRGGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLANIKRRRQTSQPSTTISQQSSQGHCVEVGRFGLDEEIDHLRRDKQVLMMELVKLRQQQQNTRSILQAMEERLQSTEVKQKQMMAFLARAMKNPAFIQQLLQQKEKRKEIEDAITKKRRRPIEYGESSNGGDGRSSVRYGFEVSELEMLAMEMQGLGRGGGEHEEEIEVGSAAVDWTRISDS* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3788 314 Coils Coil 232 252 - -
Mal3g3788 314 Coils Coil 170 204 - -
Mal3g3788 314 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal3g3788 314 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 298 IPR027725 -
Mal3g3788 314 Gene3D - 43 140 IPR036388 -
Mal3g3788 314 MobiDBLite consensus disorder prediction 288 314 - -
Mal3g3788 314 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 17 298 - -
Mal3g3788 314 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Mal3g3788 314 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal3g3788 314 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal3g3788 314 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal3g3788 314 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal3g3788 314 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3788 Mal-Chr3 115476532 115478712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3788 24 301 HSF AT3G22830 59.609 4.90e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mal3g3788 HSF_DNA-bind 6.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3788 K09419 - gmx:100794264 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3788 3 115476532 115478712 Mal1g2388 1 32057494 32058674 PCT