Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3729 ATGAACTATCAAATGAATGGTGAAGATGCACGCAGAGATTTAAAAAGAAAGCTCCCTCGGATGGATCGAGGACAAGAACGGAGACCTTATAATACGAATTCTACACCTTATGATAGGAACGCACTTCCTCCTGGTTGGTTAGACTGCCCAGCACAAGGGCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAACGATTACATTCCAAATAAAAAATATACTCCCAAGCAAGCAATTCTTCAACAGAGAGCTTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTACTATCCATTATCAGATTGGAGAAAAGAAGGGATTCAACATGTCAAGATAAGATGCCAAGGAAGAGATTCTGTACCTGATGATGAATCTGTACAAAAGTTTTGCAATGAGGTTCTGGATTTTCGCTCCCGAAGACCAAACACAAAGAAATATATACTTGTACATTGCACTCATGGGCATAATCGTACAGGTTATATGATTGTTCATTTTCTTGTGCGTACAGAATCAATTTCTGTCACTGAGGCAATACATAAATTTGCTCAGGCACGTCCTCCAGGAATTTACAAGCAGGATTACATTGACGCCCTGTACATGTTTTTTAATGAATGGAAGCCTGAAAATCTTGTTTGTCCACAAACTCCAGACTGGAAGAGCCTTCCTGATCCCGACTTTCATGGTGTATCTGTCTCAGCTACTGACAATTATGCAGACATTTTGCAGCAGGAGAATATTGTGAGGAATGAAGTAATGACAAATGACGATGTTTTGGGAGATCCCATTCCTTCAAACCAGCTTCGTGCAATGCGAGAAGTTTGCTATCAACTGCTCAAGTTGGGCACAGGGGGAAAAGGACTGCACTTTCCCGGATCACACCCTGTTTCTCTGAACAGGGAAAATTTGCAACTCTTAAGACAGAGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATTGACAGAAAATTTCTTTTCCAAAGGATCTCTATGCGGTTTCCTTGCAGATACTCAAAAGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACGGATCCACATACACATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTCTGACAGAGATGCCATTTTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCCCGTAACATGGAACGAGAAGCCCTTTCCAAGAGTACAAGTCCTTACTATATATACGACTTGGAACCATTTGGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCAGACCTCTCACATTCATCAGATGGTCTTGTGTTCCAGGGTTGGGATGATCCGTATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATATCCTGAGATGAACTCTGTTGATTTCCACTTTGAGGTGGGAGCTGGTAATCGACCCCTGCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATACTGTTATTTTTAAAGATGCGGAAGATATTTCTTCCTATTCAGGAAGGATTATTGAGTGCTACTGGGATGCTGCGGAGCATCACTGGGTCTGTATGCGGATCAGAGCTGATAAAGCAACTCCAAATGAATTCAGTACCTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAGGAGGTCCTGTTGAATGAGATTAGTGAGATCATTCGACTACCTTTGTATGCGGACAGAATAGATAGGGATATCAAGGCTCACCAGCATATGGTCTCGTCACGGCGCAAGTGA 1902 0.4159 MNYQMNGEDARRDLKRKLPRMDRGQERRPYNTNSTPYDRNALPPGWLDCPAQGQELGCIIPSKVPLGESFNDYIPNKKYTPKQAILQQRALGRELGLVIDLTNTTRYYPLSDWRKEGIQHVKIRCQGRDSVPDDESVQKFCNEVLDFRSRRPNTKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAIHKFAQARPPGIYKQDYIDALYMFFNEWKPENLVCPQTPDWKSLPDPDFHGVSVSATDNYADILQQENIVRNEVMTNDDVLGDPIPSNQLRAMREVCYQLLKLGTGGKGLHFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFLFQRISMRFPCRYSKGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMEREALSKSTSPYYIYDLEPFGVRRKGFWLLSTVSKLLHKFIPDLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGAGNRPLLFLFERGKKKLMEGNTVIFKDAEDISSYSGRIIECYWDAAEHHWVCMRIRADKATPNEFSTYRKVMRSIKDNITEEVLLNEISEIIRLPLYADRIDRDIKAHQHMVSSRRK* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3729 633 Gene3D DNA ligase/mRNA capping enzyme 264 500 - -
Mal3g3729 633 MobiDBLite consensus disorder prediction 8 27 - -
Mal3g3729 633 Pfam mRNA capping enzyme, catalytic domain 304 502 IPR001339 GO:0004484|GO:0005524|GO:0006370
Mal3g3729 633 PANTHER MRNA-CAPPING ENZYME-LIKE 5 633 - -
Mal3g3729 633 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 207 IPR000387 GO:0016311|GO:0016791
Mal3g3729 633 PIRSF mRNA_capping_HCE 29 633 IPR017074 GO:0004484|GO:0006370|GO:0140818
Mal3g3729 633 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Mal3g3729 633 CDD Adenylation_mRNA_capping 276 503 IPR001339 GO:0004484|GO:0005524|GO:0006370
Mal3g3729 633 PANTHER MRNA-CAPPING ENZYME 5 633 - -
Mal3g3729 633 SMART dsp_5 75 215 IPR020422 GO:0006470|GO:0008138
Mal3g3729 633 CDD RNA_5'-triphosphatase 45 211 - -
Mal3g3729 633 Gene3D - 501 610 IPR012340 -
Mal3g3729 633 SUPERFAMILY Nucleic acid-binding proteins 505 618 IPR012340 -
Mal3g3729 633 Pfam mRNA capping enzyme, C-terminal domain 507 601 IPR013846 -
Mal3g3729 633 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 294 503 - -
Mal3g3729 633 ProSiteProfiles Dual specificity protein phosphatase domain profile. 69 219 IPR020422 GO:0006470|GO:0008138
Mal3g3729 633 Pfam Dual specificity phosphatase, catalytic domain 94 212 IPR000340 GO:0008138|GO:0016311
Mal3g3729 633 Gene3D Protein tyrosine phosphatase superfamily 17 235 IPR029021 -
Mal3g3729 633 MobiDBLite consensus disorder prediction 1 44 - -
Mal3g3729 633 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 230 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3729 Mal-Chr3 114712683 114721510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3729 31 623 Protein tyrosine phosphatase (PTP) family AT3G09100 61.794 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3729 - K13917 mtr:MTR_7g094670 1243.8