Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal3g3728 | ATGATTTCTGATTTGGGCCGCTCCTTCTCTGTGGACCGGGTTGGACCTACCTTGATAATTAGGGCCAAAACGCATCCATTGCCAGCTTTGTCTACTATACTCAACTGCAACTGTGCAAATATATTAACTAGAAAGCAGCCATGTAAGTCAAGGATATGTGTGAAGAATCTCCCTAAATATGTTGCGGAGGATCGACTGAGAAAAATATTTTCTCAGAAAGGAGAAATAACTGATGTCAAGCTTATGCGTACCAAAACCGGCAAAAGTCGGCAATTTGCTTTTATCGGATTTCGTACAGACCAGGAAGCTCATGAAGCGATTCGATATTTTAATAGAAATTGCATTGACTCGGTTCAAATTACTTGTGAGGTGGCTCAAAAACTCGGTGATGCAAATCTTCCTCGTCCGTGGAGTCGACATTCATTAAAAAAAGACAATAAAGTGATCACCCCAGATCTTAACAATCATGCTAGAGCTAAAGGACATGAAGACAATTCTATGGACATTGATGACCCGAAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGAGCAACGTCTAAATTGTGGGCAAATGATACTTCAGTTCTATCCAATGATGGTAACAACCAAGCAACATTGAATAATGAGACCGAAAGTACATCAGTTGCAAACCATCCTATCTCAAATGACTCACAAGTAGATGAATTACCAAATAACCCTAAATCCGACAAGTCACGTGAGCTAAAGCATGATGGAGTAATTTCTGATATGGATTATTTCAAGAGTAAAGTGACAACGGAGTGGTCTGATTCTGAAAGCAGTGATGATGACAACGACGATGACAACAATGATTCGGCGTCTTCTGATGATGGTGACAAAGATAACCATCATCATGCTACTGAACATGAAGAAAATCGTGGTAATAACCCTTCTGAAAGAACCCCAAGAAGTGGTGCTCAAGAGTTAGATCTAGAGGACCAAGAAAATACTGTTGGAGAGAATGCTGCCAATGATAAGTCTCAAGTGAATGCAACTGAGGAAGAGGGGCAATTGTCAAATCCAGAAGATAAGAACAGAGTTTCTGAGCCGTGTCGACTGTTTGTCCGTAATCTGCCATATTCGACCACTGAGGAGGAACTGGAAGAACATTTCAGTCAGTTTGGCAGTGTCTCACAGGCTCATTTAGTTGTTGATAAGGATACAAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGTTCCAGAATTTGCAGCCAGGGCGCTAGAAGAGTCGGACAATTCAATCTTCCAGGGGAGAATATTGCATGTTATGCCAGCTATACCAAGACATTCAAACAATGAAGAGAACAAGGACCAAGGCTCTAAAACTCTCAAACAACGAAGAGAGGAAGAAAGGAAAGCAGCTGAAGCTAAAGGAGATACCAGAGCATGGAATCGTCTGTTCATGCGCCCTGATACAATTGTAGAAAACGTTGCCCGGAAATATGGTGTTAGTAAAAGTGATTTACTGGATCGAGAAGCTGATGATCTTGCTGTACGTATTGCCCTGGGAGAAACTCAAGTGATTTCAGAAACAAAAAATGCATTTAAAAAAGCTGGAGTGAATGTGGAGTCTTTGGAGGAGCTTGCGAAGGGTAAAGTTGATGACGTGAAAAGAAGTAACCATGTACTTTTAGCAAAAAACTTGCCATATGGTGCTACGGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCGACAAAAACATTGGCCCTGGTTATTTTTCTTGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCCCCCTTATACTTGGAATGGGCTCCTTCCGATATTCTTAGCCCAAAATCAACATTGAAAAATGATGAGGTGAATAATGGAATTGCTGAAAAGGATGTCAAGCGAGTGATATTAGAGAAAGACGTGGAAAGAATATCAGATGTTGATATTGATCCAGACAGAATAGAGGCTCGTTCCCTGTTTGTCAAGAACCTAAATTTCAAGACGACAGATGAGGGTTTGAGGGAACATTTCAGTGAACAGATGAAAGAGGGACGGATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAAGGGGAAAAATGTTTCTATGGGATTTGGATTTGTTGAGTTTGACTCTACAGAGACTGCTACAAGTGTTTGCAACGATTTGCAGGGGACTGTTTTGGACGGTCATGCTCTTATTTTACAACTCTGCCATGTCAAGAATGATGGTAAAGTACAAAAGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTATTTAGCCCGTTTGGCCAGATTAAAAGTTTAAGATTGCCAATGAAGTTTGGAAATCATAGAGGTTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTGCAGCACTCTCAAGCACCCACTTGTATGGCAGACATCTGGTGATAGAGAGAGCAAAAGAAGGTGAGAGTTTGGAGGAACTGCGGGCTCGAACTGCTACTCAATTTAATGAACATAGCGGATTTCAAGATGCTAACTTATCCAAGAAAAGGAAGGCCATTAGTATGTTCGATGAAGGGAATATGGATTTTGAAAGGTTTGATTAG | 2682 | 0.4049 | MISDLGRSFSVDRVGPTLIIRAKTHPLPALSTILNCNCANILTRKQPCKSRICVKNLPKYVAEDRLRKIFSQKGEITDVKLMRTKTGKSRQFAFIGFRTDQEAHEAIRYFNRNCIDSVQITCEVAQKLGDANLPRPWSRHSLKKDNKVITPDLNNHARAKGHEDNSMDIDDPKLQDFLQVMQPRATSKLWANDTSVLSNDGNNQATLNNETESTSVANHPISNDSQVDELPNNPKSDKSRELKHDGVISDMDYFKSKVTTEWSDSESSDDDNDDDNNDSASSDDGDKDNHHHATEHEENRGNNPSERTPRSGAQELDLEDQENTVGENAANDKSQVNATEEEGQLSNPEDKNRVSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSVPEFAARALEESDNSIFQGRILHVMPAIPRHSNNEENKDQGSKTLKQRREEERKAAEAKGDTRAWNRLFMRPDTIVENVARKYGVSKSDLLDREADDLAVRIALGETQVISETKNAFKKAGVNVESLEELAKGKVDDVKRSNHVLLAKNLPYGATENELAKMFGKFGSLDKIILPSTKTLALVIFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSDILSPKSTLKNDEVNNGIAEKDVKRVILEKDVERISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSEQMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKNDGKVQKKVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALAALSSTHLYGRHLVIERAKEGESLEELRARTATQFNEHSGFQDANLSKKRKAISMFDEGNMDFERFD* | 894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 265 | 281 | - | - | |
| Mal3g3728 | 893 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 358 | 436 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 550 | 622 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 147 | 170 | - | - | |
| Mal3g3728 | 893 | Gene3D | - | 325 | 470 | IPR012677 | - | |
| Mal3g3728 | 893 | CDD | RRM6_RBM19_RRM5_MRD1 | 770 | 844 | - | - | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 231 | 247 | - | - | |
| Mal3g3728 | 893 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 670 | 753 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | SUPERFAMILY | RNA-binding domain, RBD | 350 | 444 | IPR035979 | GO:0003676 | |
| Mal3g3728 | 893 | Gene3D | - | 42 | 131 | IPR012677 | - | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 439 | 465 | - | - | |
| Mal3g3728 | 893 | PANTHER | RNA-BINDING PROTEIN 19-RELATED | 50 | 871 | - | - | |
| Mal3g3728 | 893 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 50 | 127 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 195 | 247 | - | - | |
| Mal3g3728 | 893 | CDD | RRM4_RBM19_RRM3_MRD1 | 550 | 621 | - | - | |
| Mal3g3728 | 893 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 50 | 871 | - | - | |
| Mal3g3728 | 893 | SUPERFAMILY | RNA-binding domain, RBD | 49 | 135 | IPR035979 | GO:0003676 | |
| Mal3g3728 | 893 | CDD | RRM3_RBM19_RRM2_MRD1 | 359 | 432 | - | - | |
| Mal3g3728 | 893 | Gene3D | - | 667 | 760 | IPR012677 | - | |
| Mal3g3728 | 893 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 52 | 117 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 772 | 839 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 672 | 746 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 555 | 613 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 360 | 429 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | SMART | rrm1_1 | 51 | 123 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | SMART | rrm1_1 | 671 | 749 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | SMART | rrm1_1 | 771 | 842 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | SMART | rrm1_1 | 359 | 432 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | SMART | rrm1_1 | 551 | 618 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | Gene3D | - | 542 | 646 | IPR012677 | - | |
| Mal3g3728 | 893 | Gene3D | - | 761 | 869 | IPR012677 | - | |
| Mal3g3728 | 893 | SUPERFAMILY | RNA-binding domain, RBD | 766 | 848 | IPR035979 | GO:0003676 | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 259 | 352 | - | - | |
| Mal3g3728 | 893 | SUPERFAMILY | RNA-binding domain, RBD | 547 | 634 | IPR035979 | GO:0003676 | |
| Mal3g3728 | 893 | CDD | RRM5_RBM19_like | 670 | 751 | IPR034423 | - | |
| Mal3g3728 | 893 | CDD | RRM1_MRD1 | 50 | 125 | - | - | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 324 | 343 | - | - | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 435 | 465 | - | - | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 282 | 304 | - | - | |
| Mal3g3728 | 893 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 770 | 846 | IPR000504 | GO:0003723 | |
| Mal3g3728 | 893 | MobiDBLite | consensus disorder prediction | 195 | 230 | - | - | |
| Mal3g3728 | 893 | SUPERFAMILY | RNA-binding domain, RBD | 658 | 756 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal3g3728 | Mal-Chr3 | 114694383 | 114706814 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal3g3728 | 638 | 863 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 28.163 | 1.96e-12 | 69.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal3g3728 | K14787 | - | gmx:100798742 | 1144.03 |