Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3657 ATGGCTCCTGGTGGAAGTATTTTCAAAGAAGTTCTCGAATCTCACCTCTTGACTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGATTAACAGTACATTTACAAAATCCACTAGTGTCGGGTTGAATGGAAAGCATGGAACTAGTTCAAAGAATGGCGTGCATGACTTACTCGGGTGCCCTGTCTGCAAGAATTTGATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCAGAATCTTTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTAACGATATTTTCCCTTACTATGCTAAGCTTAAGCATGAGCAAAATTGTGGATTTCGTCCGTACAATTGTCCATATGCTGGATCTGAGTGCTCCGTGATGGGTGACATTCCAACTCTTGTTTCACATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAACCATCGATATGTCAAAACAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGCTACAGCTTAGAAGTTGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTCGGAGCATTCGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGACGGACTTATAATTCAGAGGAATCAAGCCCTTTATTTTTCCGGTGGGGATAAACAGGAGTTGAAATTGAGAATCACTGGTCGTATATGGAAAGAAGATTGA 933 0.4126 MAPGGSIFKEVLESHLLTSDYETGKAKSEAKINSTFTKSTSVGLNGKHGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVSHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3657 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 169 IPR013083 -
Mal3g3657 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 303 IPR008974 GO:0005515
Mal3g3657 310 SUPERFAMILY RING/U-box 55 104 - -
Mal3g3657 310 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Mal3g3657 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Mal3g3657 310 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Mal3g3657 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 309 - -
Mal3g3657 310 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal3g3657 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 114 IPR013083 -
Mal3g3657 310 SUPERFAMILY TRAF domain-like 115 307 - -
Mal3g3657 310 CDD RING-HC_SIAHs 62 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3657 Mal-Chr3 113964365 113966576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3657 1 310 C3H Transcription Factor Family AT2G41980 77.742 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3657 K04506 - gmx:100813966 591.267