Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3646 ATGGAGCTGGCTTTGAGCTTAGGCGACACACCAAAACCGTTCCCTTTGTTTGAAAACCCCACAAAATTACCCAACAAAGGTTTATGCATATCACTTGAAGAACAAGATGAAAAATCCTCAGATCCAACCATTCAGCTCAACCTTCTTCCTTCAACACCGCTTCTTCGTTCCCATCCTTCTCCACACCTTCCAATTCCCTGGCTCAACGATGCACTCGTTGTGGAGCCGGTAAGGGTGTGGGATGCTACCGACGAGGGAGCTGCGGTTTCATCCCCGAATAGTGCGGTGTCATGTTTTCAGATGGATTTCTCAATCATGAATGGTAATGGTAATGCCGAGGGTGCAGCCAGAAATAGTAGTCGTGAGGAGGGTGCAGATAGAAATACTAGCGATGATGAAGAAAATGGCTCCACTCGGAAGAAACTCAGACTCTCTAAGGAACAATCAGTTTTCCTTGAAGATAGTTTCAAAGAACACACCACTCTCAATCCTAAGCAGAAACTTGCTCTTGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGTTAAAACAAACGGAAGTGGATTGTGAGTACTTAAAAAGATGTTGTGAGACACTAACAGAAGAGAATAAAAGGTTACAAAAGGAACTTCAAGAATTAAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACTACTCTCACTATGTGTCCCTCTTGTGAAAAGGTCGCCACCAACACCACCGGAACCGCCGCCACTGCCAAACAAACCACCTCAATCACTGCGGGCGGGCGCCACCTACAATAA 834 0.4472 MELALSLGDTPKPFPLFENPTKLPNKGLCISLEEQDEKSSDPTIQLNLLPSTPLLRSHPSPHLPIPWLNDALVVEPVRVWDATDEGAAVSSPNSAVSCFQMDFSIMNGNGNAEGAARNSSREEGADRNTSDDEENGSTRKKLRLSKEQSVFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCEKVATNTTGTAATAKQTTSITAGGRHLQ* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3646 277 CDD bZIP 188 227 - -
Mal3g3646 277 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677
Mal3g3646 277 MobiDBLite consensus disorder prediction 119 142 - -
Mal3g3646 277 SMART HOX_1 137 199 IPR001356 GO:0003677
Mal3g3646 277 MobiDBLite consensus disorder prediction 110 142 - -
Mal3g3646 277 Gene3D - 143 193 - -
Mal3g3646 277 SUPERFAMILY Homeodomain-like 129 196 IPR009057 -
Mal3g3646 277 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 34 270 - -
Mal3g3646 277 Pfam Homeodomain 139 193 IPR001356 GO:0003677
Mal3g3646 277 PANTHER - 34 270 - -
Mal3g3646 277 SMART halz 195 238 IPR003106 GO:0006355|GO:0043565
Mal3g3646 277 Coils Coil 201 231 - -
Mal3g3646 277 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981|GO:0006355
Mal3g3646 277 Pfam Homeobox associated leucine zipper 195 229 IPR003106 GO:0006355|GO:0043565
Mal3g3646 277 CDD homeodomain 139 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3646 Mal-Chr3 113852721 113854618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3646 131 263 Homeobox Transcription Factor Family AT4G37790 75.940 1.38e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal3g3646 Homeodomain 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3646 K09338 - gmx:100810885 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3646 3 113852721 113854618 Mal3g3646 3 113852721 113854618 ECH
Mal3g3646 3 113852721 113854618 Mal1g3559 1 63864257 63866155 PCT